View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_low_38 (Length: 296)
Name: NF19438_low_38
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_low_38 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 2951651 - 2951929
Alignment:
| Q |
18 |
atggccggagggaatacttaacttatatcttaaannnnnnnnaaaccaacttatatcttaattattaacatagttatgtggggatgaagtcatgtacatg |
117 |
Q |
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| T |
2951651 |
atggccggagggaatacttaacttatatcttaaattttttttaaaccaacttatatcttaattattaacatagttatgtggggatgaagtcatgtacatg |
2951750 |
T |
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| Q |
118 |
ttcctctaatatttattcaatctctcactatctactccattttgttagagatttgattcgaaaatgtatgattttctaataacatgagaaattctagtgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2951751 |
ttcctctaatatttattcaatctctcactatctactccattttgttagagatttgattcgaaaatgtatgattttctaataacatgagaaattctagtgt |
2951850 |
T |
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| Q |
218 |
tcttttgggaattgtggtcccacctgtctgaatgcaaaatagaacaaaatcttgtagtgcaaagcatatgtgggtggca |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2951851 |
tcttttgggaattgtggtcccacctgtctgaatgcaaaatagaacaaaatcttgtagtgcaaagcatatgtaggtggca |
2951929 |
T |
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