View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19438_low_39 (Length: 296)

Name: NF19438_low_39
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19438_low_39
NF19438_low_39
[»] scaffold0160 (3 HSPs)
scaffold0160 (1-208)||(29299-29509)
scaffold0160 (203-247)||(29582-29626)
scaffold0160 (257-287)||(29623-29653)
[»] chr5 (11 HSPs)
chr5 (3-41)||(6014439-6014477)
chr5 (3-43)||(33709660-33709700)
chr5 (3-40)||(31288105-31288142)
chr5 (3-37)||(4603781-4603815)
chr5 (3-37)||(8484820-8484854)
chr5 (3-37)||(13108608-13108642)
chr5 (3-37)||(22392705-22392739)
chr5 (3-37)||(23270681-23270715)
chr5 (3-37)||(25586936-25586970)
chr5 (3-37)||(32059599-32059633)
chr5 (3-37)||(38631120-38631154)
[»] chr4 (12 HSPs)
chr4 (3-42)||(35229167-35229206)
chr4 (3-37)||(5609361-5609395)
chr4 (3-37)||(20566353-20566387)
chr4 (3-37)||(25852218-25852252)
chr4 (3-37)||(32986201-32986235)
chr4 (3-37)||(33696438-33696472)
chr4 (3-37)||(40059011-40059045)
chr4 (3-37)||(46714396-46714430)
chr4 (3-37)||(54127501-54127535)
chr4 (3-43)||(1985833-1985874)
chr4 (3-43)||(19660691-19660732)
chr4 (3-36)||(22625229-22625262)
[»] chr7 (17 HSPs)
chr7 (1-37)||(28646977-28647013)
chr7 (3-37)||(2103063-2103097)
chr7 (3-37)||(2344307-2344341)
chr7 (3-37)||(2751279-2751313)
chr7 (3-37)||(7176021-7176055)
chr7 (3-37)||(7275285-7275319)
chr7 (3-37)||(13332582-13332616)
chr7 (3-37)||(18044115-18044149)
chr7 (3-37)||(21217992-21218026)
chr7 (3-37)||(22119896-22119930)
chr7 (3-37)||(23854404-23854438)
chr7 (3-37)||(27312160-27312194)
chr7 (3-37)||(40543069-40543103)
chr7 (1-43)||(25956321-25956365)
chr7 (3-36)||(42913672-42913705)
chr7 (1-37)||(12211692-12211728)
chr7 (3-43)||(28950870-28950910)
[»] chr3 (12 HSPs)
chr3 (3-43)||(15566658-15566698)
chr3 (3-43)||(32151422-32151462)
chr3 (3-37)||(25379765-25379799)
chr3 (3-37)||(30257628-30257662)
chr3 (3-37)||(30807312-30807346)
chr3 (3-37)||(34492734-34492768)
chr3 (3-37)||(35492915-35492949)
chr3 (3-37)||(45529913-45529947)
chr3 (3-37)||(46576352-46576386)
chr3 (3-37)||(53424335-53424369)
chr3 (1-37)||(4252553-4252589)
chr3 (3-35)||(26174119-26174151)
[»] chr2 (4 HSPs)
chr2 (1-37)||(8192508-8192544)
chr2 (3-37)||(18976584-18976618)
chr2 (2-43)||(19606003-19606044)
chr2 (4-37)||(33827733-33827766)
[»] chr1 (9 HSPs)
chr1 (3-43)||(6776142-6776182)
chr1 (4-35)||(25496648-25496679)
chr1 (3-37)||(4621396-4621430)
chr1 (3-37)||(7197405-7197439)
chr1 (3-37)||(8077651-8077685)
chr1 (3-37)||(24674397-24674431)
chr1 (3-37)||(34778346-34778380)
chr1 (3-43)||(14258586-14258627)
chr1 (1-37)||(1095152-1095188)
[»] chr8 (11 HSPs)
chr8 (3-53)||(4718636-4718687)
chr8 (3-37)||(2618194-2618228)
chr8 (3-37)||(3734782-3734816)
chr8 (3-37)||(18532115-18532149)
chr8 (3-37)||(19471617-19471651)
chr8 (3-37)||(19542541-19542575)
chr8 (3-37)||(19590121-19590155)
chr8 (3-37)||(28193482-28193516)
chr8 (3-37)||(34237814-34237848)
chr8 (3-37)||(42328013-42328047)
chr8 (1-37)||(41070769-41070805)
[»] scaffold0623 (1 HSPs)
scaffold0623 (3-37)||(1215-1249)
[»] scaffold0576 (1 HSPs)
scaffold0576 (3-37)||(5241-5275)
[»] scaffold0459 (1 HSPs)
scaffold0459 (3-37)||(10852-10886)
[»] scaffold0366 (2 HSPs)
scaffold0366 (3-37)||(9458-9492)
scaffold0366 (3-37)||(12159-12193)
[»] scaffold0199 (1 HSPs)
scaffold0199 (3-37)||(8566-8600)
[»] chr6 (9 HSPs)
chr6 (3-37)||(9238979-9239013)
chr6 (3-37)||(11448875-11448909)
chr6 (3-37)||(12591641-12591675)
chr6 (3-37)||(15360257-15360291)
chr6 (3-37)||(22576071-22576105)
chr6 (3-37)||(34147350-34147384)
chr6 (3-37)||(34159966-34160000)
chr6 (3-43)||(21148669-21148710)
chr6 (1-37)||(8479316-8479352)
[»] scaffold0051 (1 HSPs)
scaffold0051 (3-43)||(53030-53071)


Alignment Details
Target: scaffold0160 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 29299 - 29509
Alignment:
Q  1 acactccaagatcccaagccaatcactaggccaa-cccaaatggctcacccttaatttttaattccagtcattgggaaaacactgattatttcgaaaatg 99  Q
    ||||| |||||| ||||||||| ||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29299 acacttcaagattccaagccaaccactaggccaatcccaaatagctcatccttaatttttaattccagtcattgggaaaacaccgattatttcgaaaatg 29398  T
Q  100 actctaacttttttattgattgttcaaatta--ttacttaaaaaacacataattcggaagtatgagaggtaaaattggaaaatccttcggggggatgaga 197  Q
    ||||||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29399 actctaatttttttattgattgttcaaattattttacttaagaaacacataattcggaagtatgagaggtaaaattggaaaatccttcggggggatgaga 29498  T
Q  198 tagctcaacta 208  Q
    |||||||||||    
T  29499 tagctcaacta 29509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 29582 - 29626
Alignment:
Q  203 caactaattactagcatttgccattaaaaaataacttgttaaatc 247  Q
    ||||||||||||||||||||||||||||||| || ||||||||||    
T  29582 caactaattactagcatttgccattaaaaaaaaaattgttaaatc 29626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 287
Target Start/End: Original strand, 29623 - 29653
Alignment:
Q  257 aatccttcaacaacattactttgtttcttct 287  Q
    |||||||||||||||||||||||||||||||    
T  29623 aatccttcaacaacattactttgtttcttct 29653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 6014439 - 6014477
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaacccaaat 41  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6014439 actccaagatcccaagccaatcactaggccaacccaaat 6014477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 33709660 - 33709700
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaacccaaatgg 43  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  33709660 actccaagatcccaagccaaccactaggccaacccaaatgg 33709700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 31288105 - 31288142
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaacccaaa 40  Q
    |||||||||||||||||||| |||||||||||||||||    
T  31288105 actccaagatcccaagccaaccactaggccaacccaaa 31288142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 4603815 - 4603781
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  4603815 actccaagatcccaagccaaccactaggccaaccc 4603781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 8484820 - 8484854
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  8484820 actccaagatcccaagccaaccactaggccaaccc 8484854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 13108608 - 13108642
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  13108608 actccaagatcccaagccaaccactaggccaaccc 13108642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 22392739 - 22392705
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  22392739 actccaagatcccaagccaaccactaggccaaccc 22392705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 23270681 - 23270715
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  23270681 actccaagatcccaagccaaccactaggccaaccc 23270715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 25586970 - 25586936
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  25586970 actccaagatcccaagccaaccactaggccaaccc 25586936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 32059599 - 32059633
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  32059599 actccaagatcccaagccaaccactaggccaaccc 32059633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 38631120 - 38631154
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  38631120 actccaagatcccaagccaaccactaggccaaccc 38631154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 35229206 - 35229167
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaacccaaatg 42  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  35229206 actccaagatcccaagccaaccactaggccaacccaaatg 35229167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 5609361 - 5609395
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  5609361 actccaagatcccaagccaaccactaggccaaccc 5609395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 20566387 - 20566353
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  20566387 actccaagatcccaagccaaccactaggccaaccc 20566353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 25852252 - 25852218
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  25852252 actccaagatcccaagccaaccactaggccaaccc 25852218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 32986235 - 32986201
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  32986235 actccaagatcccaagccaaccactaggccaaccc 32986201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 33696438 - 33696472
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  33696438 actccaagatcccaagccaaccactaggccaaccc 33696472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 40059011 - 40059045
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  40059011 actccaagatcccaagccaaccactaggccaaccc 40059045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 46714430 - 46714396
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  46714430 actccaagatcccaagccaaccactaggccaaccc 46714396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 54127501 - 54127535
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  54127501 actccaagatcccaagccaaccactaggccaaccc 54127535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 1985874 - 1985833
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaa-cccaaatgg 43  Q
    |||||||||||||||||||| ||||||||||| |||||||||    
T  1985874 actccaagatcccaagccaaccactaggccaatcccaaatgg 1985833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 19660691 - 19660732
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaac-ccaaatgg 43  Q
    |||||||||||||||||||| |||||||||||| ||||||||    
T  19660691 actccaagatcccaagccaaccactaggccaactccaaatgg 19660732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 22625229 - 22625262
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaacc 36  Q
    |||||||||||||||||||| |||||||||||||    
T  22625229 actccaagatcccaagccaaccactaggccaacc 22625262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28647013 - 28646977
Alignment:
Q  1 acactccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||| ||||||||||||||||||    
T  28647013 acactccaagatcccaagtcaatcactaggccaaccc 28646977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 2103097 - 2103063
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  2103097 actccaagatcccaagccaaccactaggccaaccc 2103063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 2344341 - 2344307
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  2344341 actccaagatcccaagccaaccactaggccaaccc 2344307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 2751313 - 2751279
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  2751313 actccaagatcccaagccaaccactaggccaaccc 2751279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 7176021 - 7176055
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  7176021 actccaagatcccaagccaaccactaggccaaccc 7176055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 7275319 - 7275285
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  7275319 actccaagatcccaagccaaccactaggccaaccc 7275285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 13332582 - 13332616
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  13332582 actccaagatcccaagccaaccactaggccaaccc 13332616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 18044149 - 18044115
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  18044149 actccaagatcccaagccaaccactaggccaaccc 18044115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 21217992 - 21218026
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  21217992 actccaagatcccaagccaaccactaggccaaccc 21218026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 22119930 - 22119896
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  22119930 actccaagatcccaagccaaccactaggccaaccc 22119896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 23854438 - 23854404
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  23854438 actccaagatcccaagccaaccactaggccaaccc 23854404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 27312194 - 27312160
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  27312194 actccaagatcccaagccaaccactaggccaaccc 27312160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 40543069 - 40543103
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  40543069 actccaagatcccaagccaaccactaggccaaccc 40543103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 25956321 - 25956365
Alignment:
Q  1 acactccaagatcccaagccaat--cactaggccaacccaaatgg 43  Q
    |||||||||| ||||||||||||  ||||||||||||||||||||    
T  25956321 acactccaaggtcccaagccaataccactaggccaacccaaatgg 25956365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 42913672 - 42913705
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaacc 36  Q
    |||||||||||||||||||| |||||||||||||    
T  42913672 actccaagatcccaagccaaccactaggccaacc 42913705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12211692 - 12211728
Alignment:
Q  1 acactccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  12211692 acactccaagatcctaagccaaccactaggccaaccc 12211728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 28950910 - 28950870
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaacccaaatgg 43  Q
    ||||||||| |||||||||| ||||||||||||| ||||||    
T  28950910 actccaagaccccaagccaaccactaggccaacctaaatgg 28950870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 15566658 - 15566698
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaacccaaatgg 43  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  15566658 actccaagatctcaagccaaccactaggccaacccaaatgg 15566698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 32151462 - 32151422
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaacccaaatgg 43  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  32151462 actccaagatcccaagtcaaccactaggccaacccaaatgg 32151422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 25379799 - 25379765
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  25379799 actccaagatcccaagccaaccactaggccaaccc 25379765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 30257662 - 30257628
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  30257662 actccaagatcccaagccaaccactaggccaaccc 30257628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 30807312 - 30807346
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  30807312 actccaagatcccaagccaaccactaggccaaccc 30807346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 34492734 - 34492768
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  34492734 actccaagatcccaagccaaccactaggccaaccc 34492768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 35492949 - 35492915
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  35492949 actccaagatcccaagccaaccactaggccaaccc 35492915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 45529913 - 45529947
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  45529913 actccaagatcccaagccaaccactaggccaaccc 45529947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 46576386 - 46576352
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  46576386 actccaagatcccaagccaaccactaggccaaccc 46576352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 53424335 - 53424369
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  53424335 actccaagatcccaagccaaccactaggccaaccc 53424369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4252553 - 4252589
Alignment:
Q  1 acactccaagatcccaagccaatcactaggccaaccc 37  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  4252553 acactccaagatctcaagccaaccactaggccaaccc 4252589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 26174151 - 26174119
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaac 35  Q
    |||||||||||||||||||| ||||||||||||    
T  26174151 actccaagatcccaagccaaccactaggccaac 26174119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8192508 - 8192544
Alignment:
Q  1 acactccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||||| ||||||||||||||    
T  8192508 acactccaagatcccaagccaaccactaggccaaccc 8192544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 18976584 - 18976618
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  18976584 actccaagatcccaagccaaccactaggccaaccc 18976618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 19606003 - 19606044
Alignment:
Q  2 cactccaagatcccaagccaatcactaggccaacccaaatgg 43  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||    
T  19606003 cactccaagatcccaagccaaccactagggcaacccagatgg 19606044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 33827733 - 33827766
Alignment:
Q  4 ctccaagatcccaagccaatcactaggccaaccc 37  Q
    ||||||||||||||||||| ||||||||||||||    
T  33827733 ctccaagatcccaagccaaccactaggccaaccc 33827766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 6776182 - 6776142
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaacccaaatgg 43  Q
    ||||||||||||||| |||| ||||||||||||||||||||    
T  6776182 actccaagatcccaaaccaaccactaggccaacccaaatgg 6776142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 35
Target Start/End: Original strand, 25496648 - 25496679
Alignment:
Q  4 ctccaagatcccaagccaatcactaggccaac 35  Q
    ||||||||||||||||||||||||||||||||    
T  25496648 ctccaagatcccaagccaatcactaggccaac 25496679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 4621396 - 4621430
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  4621396 actccaagatcccaagccaaccactaggccaaccc 4621430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 7197405 - 7197439
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  7197405 actccaagatcccaagccaaccactaggccaaccc 7197439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 8077685 - 8077651
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  8077685 actccaagatcccaagccaaccactaggccaaccc 8077651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 24674431 - 24674397
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  24674431 actccaagatcccaagccaaccactaggccaaccc 24674397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 34778380 - 34778346
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  34778380 actccaagatcccaagccaaccactaggccaaccc 34778346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 14258586 - 14258627
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaa-cccaaatgg 43  Q
    |||||||||||||||||||| ||||||||||| |||||||||    
T  14258586 actccaagatcccaagccaaccactaggccaagcccaaatgg 14258627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1095152 - 1095188
Alignment:
Q  1 acactccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||||| |||||| |||||||    
T  1095152 acactccaagatcccaagccaaccactagaccaaccc 1095188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 4718687 - 4718636
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaa-cccaaatggctcaccctta 53  Q
    |||||||||||||||||||| ||||||||||| ||||||||| | |||||||    
T  4718687 actccaagatcccaagccaaccactaggccaaccccaaatgggttaccctta 4718636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 2618228 - 2618194
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  2618228 actccaagatcccaagccaaccactaggccaaccc 2618194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 3734782 - 3734816
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  3734782 actccaagatcccaagccaaccactaggccaaccc 3734816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 18532149 - 18532115
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  18532149 actccaagatcccaagccaaccactaggccaaccc 18532115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 19471651 - 19471617
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  19471651 actccaagatcccaagccaaccactaggccaaccc 19471617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 19542575 - 19542541
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  19542575 actccaagatcccaagccaaccactaggccaaccc 19542541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 19590121 - 19590155
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  19590121 actccaagatcccaagccaaccactaggccaaccc 19590155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 28193516 - 28193482
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  28193516 actccaagatcccaagccaaccactaggccaaccc 28193482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 34237814 - 34237848
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  34237814 actccaagatcccaagccaaccactaggccaaccc 34237848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 42328047 - 42328013
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  42328047 actccaagatcccaagccaaccactaggccaaccc 42328013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 41070805 - 41070769
Alignment:
Q  1 acactccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  41070805 acactccaagatcccaagtcaaccactaggccaaccc 41070769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 1215 - 1249
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  1215 actccaagatcccaagccaaccactaggccaaccc 1249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 5241 - 5275
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  5241 actccaagatcccaagccaaccactaggccaaccc 5275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 10852 - 10886
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  10852 actccaagatcccaagccaaccactaggccaaccc 10886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 9458 - 9492
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  9458 actccaagatcccaagccaaccactaggccaaccc 9492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 12159 - 12193
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  12159 actccaagatcccaagccaaccactaggccaaccc 12193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 8566 - 8600
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  8566 actccaagatcccaagccaaccactaggccaaccc 8600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 9239013 - 9238979
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  9239013 actccaagatcccaagccaaccactaggccaaccc 9238979  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 11448909 - 11448875
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  11448909 actccaagatcccaagccaaccactaggccaaccc 11448875  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 12591675 - 12591641
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  12591675 actccaagatcccaagccaaccactaggccaaccc 12591641  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 15360257 - 15360291
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  15360257 actccaagatcccaagccaaccactaggccaaccc 15360291  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 22576105 - 22576071
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  22576105 actccaagatcccaagccaaccactaggccaaccc 22576071  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 34147384 - 34147350
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  34147384 actccaagatcccaagccaaccactaggccaaccc 34147350  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 34160000 - 34159966
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  34160000 actccaagatcccaagccaaccactaggccaaccc 34159966  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 21148669 - 21148710
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaac-ccaaatgg 43  Q
    |||||||||||||||||||| |||||||||||| ||||||||    
T  21148669 actccaagatcccaagccaaccactaggccaactccaaatgg 21148710  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8479352 - 8479316
Alignment:
Q  1 acactccaagatcccaagccaatcactaggccaaccc 37  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  8479352 acactccaagatcccaagtcaaccactaggccaaccc 8479316  T

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Target: scaffold0051 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 53030 - 53071
Alignment:
Q  3 actccaagatcccaagccaatcactaggccaa-cccaaatgg 43  Q
    |||||||||||||||||||| ||||||||||| |||||||||    
T  53030 actccaagatcccaagccaaccactaggccaatcccaaatgg 53071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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