View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_low_42 (Length: 273)
Name: NF19438_low_42
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 3 - 254
Target Start/End: Original strand, 39384199 - 39384452
Alignment:
| Q |
3 |
tagttgaaattatatatgtaccttgccattatagtttctatcaaaataaagacatgtcccaaagtgcttaaacacagtgtcctttaaatcaggaggaaac |
102 |
Q |
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| T |
39384199 |
tagttgaaattatatatgtaccttgccattatagtttctatcaaaataaagacatgtcccaaagtgcttaaacacagtgtcctttaaatcaggaggaaac |
39384298 |
T |
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| Q |
103 |
ctaggaataatatcatagctataaacaattctgtaaaacttaatacaattatctttcaaattcttctccatgtatttagcaa--atatgtcatctccaac |
200 |
Q |
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| T |
39384299 |
ctaggaataatatcatagctataaacaattctgtaaaacttaataccattatctttcaaattcttctccatgtattcagtaaatatatgtcatctccaac |
39384398 |
T |
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| Q |
201 |
tcttggttgaccaaatgtgtaaaccccttgaagcctctccaaaagaaaggactc |
254 |
Q |
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| T |
39384399 |
tcttggttgaccaaatgtgtgaaccccttgaagcctctccaaaagaaaggactc |
39384452 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 6289609 - 6289570
Alignment:
| Q |
190 |
tcatctccaactcttggttgaccaaatgtgtaaacccctt |
229 |
Q |
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| T |
6289609 |
tcatctccaactcttggttgtccaaatgtgtaaatccctt |
6289570 |
T |
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