View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_low_5 (Length: 556)
Name: NF19438_low_5
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 253 - 545
Target Start/End: Complemental strand, 21699926 - 21699634
Alignment:
| Q |
253 |
tcacaatatgcatatttcccttcaacaacgtgttgctactattttatggagtctttggaaacaccgcaacctcaaattatggcaaaatgaacaacaatta |
352 |
Q |
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| T |
21699926 |
tcacaatatgcatatttcccttcaacaacgtgttgctactattttatggagtctttggaaacaccgcaagctcaaattatggcaaaatgaacaacaatta |
21699827 |
T |
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| Q |
353 |
agtgttcatatggttgagagt--aaagaacataatggagggatggttagctgtgcatatactccccccactgatacaaaactacatcatggtccggctat |
450 |
Q |
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| T |
21699826 |
agtgttcatgtggttgagagagcaaagaacataatggagggatgggtagcagtgcata--ctccccccactgatacaaaaccacatcatggtccgactat |
21699729 |
T |
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| Q |
451 |
aggtaaccccacgcatctctaatcagctgaatcgatcagatggcagaagcccgcaccgggacgactgaaatgcaacattgacgcctctttttctt |
545 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21699728 |
aggtaaccccacgcgccactaatcagctgaatcgatcagatggcagaagcccgcaccgggacgactgaaatgcaacattgacgcctctttttctt |
21699634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 21700198 - 21699960
Alignment:
| Q |
19 |
ggtacctggaaactaaaggctccctcaaaaattcagagttttatatggtggacttgtcgtggttgtctaccaacaagagttcggttacaaaataaggaag |
118 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21700198 |
ggtacctggaaactaaaggctcccccaaaaattcagagttttatatggtgcacttgtcgtggttgtctaccaacaagagttcgattacaaaataaggaaa |
21700099 |
T |
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| Q |
119 |
tgcattgtcctgttaattgtatcagttgtaacgactctgtagaggatgcagtacatgttttatttcaatgcccttttgcagttcaggtatggcgattggc |
218 |
Q |
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| T |
21700098 |
tgcattgtcctgttaattgtatcagttgtaacgactccgtagaggatgcagtacatgttttatttcaatgcccttttgcagttcaggtatggcgattggc |
21699999 |
T |
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| Q |
219 |
tagtctctggaattaaatttctgaccttatacagtcaca |
257 |
Q |
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| |||| |||| | |||||||| ||||||||||||||| |
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| T |
21699998 |
tggtctatggagtgaaatttctacccttatacagtcaca |
21699960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 54885926 - 54885976
Alignment:
| Q |
296 |
ttatggagtctttggaaacaccgcaacctcaaattatggcaaaatgaacaa |
346 |
Q |
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|||||||| |||||||||||||| ||||| ||||| |||||||| |||||| |
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| T |
54885926 |
ttatggagcctttggaaacaccgtaaccttaaattttggcaaaacgaacaa |
54885976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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