View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_low_52 (Length: 250)
Name: NF19438_low_52
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 55037327 - 55037564
Alignment:
| Q |
1 |
aataaacatatgaaatataatgttaagtcataacgaagtaatatgtcaatatgtcaaagtgaagtcacttagtatattgagcctactcaataacattaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
55037327 |
aataaacatatgaaatataatgttaagtcataacgaagtaatatgttaatatgtcaaagtgaagtcacttagtatgttgagcctactcaataacattaaa |
55037426 |
T |
|
| Q |
101 |
tcactgcttgtccattaacctaaactacatttttgaagattacttcatgcaagaaataagaaacacaagcacgacaagtagaaaattacatgcaatggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
55037427 |
tcactgcttgtccattaacctaaactacatttttgaagatgacttcatgcaagaaatgagaaacacaagcacgacaagtagaaaattacatgcaatggtt |
55037526 |
T |
|
| Q |
201 |
ctctaggaatnnnnnnnttgcgcttatacttcatccta |
238 |
Q |
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|||||||||| |||||||||||| |||||||| |
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| T |
55037527 |
ctctaggaataaaaaaattgcgcttatacgtcatccta |
55037564 |
T |
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