View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_low_56 (Length: 239)
Name: NF19438_low_56
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 55037320 - 55037098
Alignment:
| Q |
1 |
tagcatgtcaaagtgaaaggcgacacacacactccctttagtgtgattttggcgtatgaatgacagtcttaatatacgtagaaatataattagcaatatt |
100 |
Q |
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| T |
55037320 |
tagcatgtcaaagtgaaaggcgacacacacattccatttagtgtgattttggggtatgaatgacagtcttaatatacgtagaaatataattagcaatatt |
55037221 |
T |
|
| Q |
101 |
ataaattttatatcactcggcaatcttacgttgaattcataaccgaaataaataattagtcaacataatcaagaattgacattgtttatggaataaactg |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
55037220 |
ataaattttatatcactcggcaatcttacgatgaattcataaccgaaataaataattagtcaacataatcaagaattgacattgtttatgg-ataaactg |
55037122 |
T |
|
| Q |
201 |
tataattctatagtgacgaagttg |
224 |
Q |
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||||||||||||||||||| |||| |
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| T |
55037121 |
tataattctatagtgacgatgttg |
55037098 |
T |
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