View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_low_61 (Length: 233)
Name: NF19438_low_61
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_low_61 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 24025965 - 24026182
Alignment:
| Q |
1 |
aaatagtgtgaagaccttcatcagcaacaacatagtaatcagctaaaacaacgacatgtgtttgaatatcctcagacacacatttagtacctgaacttgg |
100 |
Q |
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| T |
24025965 |
aaatagtgtgaagaccttcatcagcaacaacatagtaatcagctaaaacaacgacatgtgtttgaatatcctcagacacacatttagtacctgaacttgg |
24026064 |
T |
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| Q |
101 |
aatggtcaaccatatagcttctgtttttagaaagagagttgttaagcacaataacaatactagcagcgtagtgattccacttcgatctcttaacttcata |
200 |
Q |
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| T |
24026065 |
aatagtcaaccatatagcttctgtttttagaaagagagttgttaagcacaataacaatactagcagcatagtgattccacttcgatctcttaacttcata |
24026164 |
T |
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| Q |
201 |
gtttaaccttagaataat |
218 |
Q |
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|||||||||||||||||| |
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| T |
24026165 |
gtttaaccttagaataat |
24026182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 32664623 - 32664696
Alignment:
| Q |
24 |
gcaacaacatagtaatcagctaaaacaacgacatgtgtttgaatatcctcagacacacatttagtacctgaact |
97 |
Q |
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|||||||||||||||| ||||||||||| || |||||||| ||||||| ||||| || ||||| |||||||| |
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| T |
32664623 |
gcaacaacatagtaattggctaaaacaacaacgtgtgtttggatatcctgcgacacgcacttagttcctgaact |
32664696 |
T |
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