View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_low_62 (Length: 231)
Name: NF19438_low_62
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 50963750 - 50963963
Alignment:
| Q |
1 |
tctcatgtgatacttactttttacatgtaacataatgatgttagtttatgtattttggagttaaaatatgtgaaatttatattgagatagaatcaatatc |
100 |
Q |
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| T |
50963750 |
tctcatgtgatacttactttttacatgtaacataatgatgttagtttatgtattttggagttaaaatatgtgaaatttatattgagatagaatcaatatc |
50963849 |
T |
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| Q |
101 |
ttaacttggttggttggttgaagtaattaacattaacatattttggcaatggtactcggtcgtgatattacaaacaattagtgtcttttggtaattaact |
200 |
Q |
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| T |
50963850 |
ttaacttggttggttggttgaagtaattaacattaacatattttggcaatggtactcggtcatgatattacaaacaattagtgtcttttggtaattaact |
50963949 |
T |
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| Q |
201 |
cttcggctctcgac |
214 |
Q |
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|||| | ||||||| |
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| T |
50963950 |
cttcagttctcgac |
50963963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 67 - 192
Target Start/End: Original strand, 50947369 - 50947494
Alignment:
| Q |
67 |
tatgtgaaatttatattgagatagaatcaatatcttaacttggttggtt-ggttgaagtaattaacattaacatattttggcaatggtactcggtcgtga |
165 |
Q |
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| T |
50947369 |
tatgtgaaatttatgttgagatataatcaatttcctaacttcgttggttaggttgaagtaatcaatattaacatattttggcgaaggtactcactcatga |
50947468 |
T |
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| Q |
166 |
tattacaaacaattagtgtcttttggt |
192 |
Q |
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| T |
50947469 |
tattacaaac-attagtgtcttttggt |
50947494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 50947306 - 50947352
Alignment:
| Q |
21 |
ttacatgtaacataatgatgttagtttatgtattttggagttaaaat |
67 |
Q |
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| T |
50947306 |
ttacatgtaacatcatgatgttagtttaattaatttggagttaaaat |
50947352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 170
Target Start/End: Original strand, 50956866 - 50956959
Alignment:
| Q |
73 |
aaatttatattgagatagaatcaatatcttaacttggttggttggttgaagtaattaacattaacatattttggcaatggtactcggtcgtgatatta |
170 |
Q |
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| T |
50956866 |
aaatttatattgagctggaatcaatttcctaacttggttcgttg----aagtgattaatgttaacatattttggtgatgatactcgctcatgatatta |
50956959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 82 - 199
Target Start/End: Original strand, 33630666 - 33630783
Alignment:
| Q |
82 |
ttgagatagaatcaatatcttaacttggttggttggttgaagtaattaacattaacatattttggcaatggtactcggtcgtgatattacaaacaattag |
181 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||| ||||| |||||| ||||||||||||| ||||| || ||||||||||||||||||| |
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| T |
33630666 |
ttgagatagaatcaatatcgtaacttggttgtttggttgaaggaattagtattaacgtattttggcaatgatactcactcatgatattacaaacaattag |
33630765 |
T |
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| Q |
182 |
tgtcttttggtaattaac |
199 |
Q |
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|||||||||||| ||||| |
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| T |
33630766 |
tgtcttttggtatttaac |
33630783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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