View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19438_low_66 (Length: 225)

Name: NF19438_low_66
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19438_low_66
NF19438_low_66
[»] chr8 (8 HSPs)
chr8 (77-223)||(25923808-25923954)
chr8 (77-121)||(25923983-25924027)
chr8 (91-217)||(24525412-24525538)
chr8 (91-223)||(24489510-24489642)
chr8 (117-217)||(20507089-20507189)
chr8 (91-222)||(25895824-25895955)
chr8 (181-222)||(30078545-30078586)
chr8 (1-29)||(25924075-25924103)
[»] chr2 (1 HSPs)
chr2 (98-155)||(36162520-36162577)
[»] chr3 (1 HSPs)
chr3 (98-197)||(45794482-45794581)
[»] chr4 (1 HSPs)
chr4 (181-223)||(17772803-17772845)


Alignment Details
Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 77 - 223
Target Start/End: Complemental strand, 25923954 - 25923808
Alignment:
Q  77 gacaaaccaaatatttgattcaattaaagttgaaaagtcaacaaaccttgtcgctctgaattatgagaaatttaagcatatcacatttatcgagcacagt 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25923954 gacaaaccaaatatttgattcaattaaagttgaaaagtcaacaaaccttgtcgctctgaattatgagaaatttaagcatatcacatttatggagcacagt 25923855  T
Q  177 aacaagaagattcgagttgaagcaagggagaatgaactttatatgat 223  Q
     ||||||||||||||||||||||||||||||||||||||||||||||    
T  25923854 gacaagaagattcgagttgaagcaagggagaatgaactttatatgat 25923808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 25924027 - 25923983
Alignment:
Q  77 gacaaaccaaatatttgattcaattaaagttgaaaagtcaacaaa 121  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  25924027 gacaaaccaaatatttgattcaattaaagtttaaaagtcaacaaa 25923983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 217
Target Start/End: Complemental strand, 24525538 - 24525412
Alignment:
Q  91 ttgattcaattaaagttgaaaagtcaacaaaccttgtcgctctgaattatgagaaatttaagcatatcacatttatcgagcacagtaacaagaagattcg 190  Q
    |||||| ||||||| || | ||||||||||||||||  ||| || |||||||||| |||||||||||  ||||| || |||||  | |  |||||||| |    
T  24525538 ttgattaaattaaacttaagaagtcaacaaaccttgctgctttggattatgagaactttaagcatatggcatttctcaagcacgttgagcagaagatttg 24525439  T
Q  191 agttgaagcaagggagaatgaacttta 217  Q
    |||| ||||| || |||||||||||||    
T  24525438 agttaaagcagggaagaatgaacttta 24525412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 223
Target Start/End: Complemental strand, 24489642 - 24489510
Alignment:
Q  91 ttgattcaattaaagttgaaaagtcaacaaaccttgtcgctctgaattatgagaaatttaagcatatcacatttatcgagcacagtaacaagaagattcg 190  Q
    |||||| |||| || |||| || |||||||||||||   |||||||||||||||| || ||||| ||  ||||| |  |||||  | |  |||||||| |    
T  24489642 ttgatttaattgaacttgagaactcaacaaaccttgctactctgaattatgagaacttgaagcagatggcatttctgaagcactttgagcagaagatttg 24489543  T
Q  191 agttgaagcaagggagaatgaactttatatgat 223  Q
    |||||||| |||||||||||||||||| |||||    
T  24489542 agttgaagaaagggagaatgaactttagatgat 24489510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 20507189 - 20507089
Alignment:
Q  117 acaaaccttgtcgctctgaattatgagaaatttaagcatatcacatttatcgagcacagtaacaagaagattcgagttgaagcaagggagaatgaacttt 216  Q
    ||||||||||   |||||||||||||||| |||||||||||  ||||| || |||||  | |  |||||||||| ||||||||| || | ||||||||||    
T  20507189 acaaaccttgctactctgaattatgagaactttaagcatatggcatttctcaagcacgttgagcagaagattcgtgttgaagcagggaataatgaacttt 20507090  T
Q  217 a 217  Q
    |    
T  20507089 a 20507089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 25895824 - 25895955
Alignment:
Q  91 ttgattcaattaaagttgaaaagtcaacaaaccttgtcgctctgaattatgagaaatttaagcatatcacatttatcgagcacagtaacaagaagattcg 190  Q
    |||||| ||||||| |||| || |||||||||||| | ||| ||||||||||||| || |||||| |  ||||| || |||||  | || |  | |||||    
T  25895824 ttgatttaattaaacttgagaactcaacaaaccttcttgctttgaattatgagaacttgaagcatctggcatttctcaagcacgttgaccaagacattcg 25895923  T
Q  191 agttgaagcaagggagaatgaactttatatga 222  Q
    ||||||| || || ||||||||||||| ||||    
T  25895924 agttgaaacagggaagaatgaactttagatga 25895955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 30078586 - 30078545
Alignment:
Q  181 agaagattcgagttgaagcaagggagaatgaactttatatga 222  Q
    |||||||||||||||||||| || ||||||||||||| ||||    
T  30078586 agaagattcgagttgaagcagggaagaatgaactttagatga 30078545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 25924103 - 25924075
Alignment:
Q  1 ctattagcaacaagggacaccgtgactca 29  Q
    |||||||||||||||||||||||||||||    
T  25924103 ctattagcaacaagggacaccgtgactca 25924075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 36162577 - 36162520
Alignment:
Q  98 aattaaagttgaaaagtcaacaaaccttgtcgctctgaattatgagaaatttaagcat 155  Q
    ||||||| |||| |||| |||||||||||| ||||||||||||||||| || ||||||    
T  36162577 aattaaacttgagaagtaaacaaaccttgttgctctgaattatgagaacttgaagcat 36162520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 45794482 - 45794581
Alignment:
Q  98 aattaaagttgaaaagtcaacaaaccttgtcgctctgaattatgagaaatttaagcatatcacatttatcgagcacagtaacaagaagattcgagttgaa 197  Q
    ||||||| ||||||||| |||||||| | | |||| |||||||||||| || || ||||| |||||| || | ||||   || |||||||||||||||||    
T  45794482 aattaaacttgaaaagttaacaaaccctattgctcagaattatgagaacttgaaacatatgacatttctcaaacacatggactagaagattcgagttgaa 45794581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 17772845 - 17772803
Alignment:
Q  181 agaagattcgagttgaagcaagggagaatgaactttatatgat 223  Q
    |||||||||||||||||||| || ||||||||||||| |||||    
T  17772845 agaagattcgagttgaagcagggaagaatgaactttagatgat 17772803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University