View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_low_71 (Length: 207)
Name: NF19438_low_71
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 13446518 - 13446673
Alignment:
| Q |
20 |
cttcattcttccacttttaagatcattctttgttgaaatcttgtagaatatgggtccttctttctttgctaatgaaaacataagaattcagtccacaata |
119 |
Q |
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| T |
13446518 |
cttcattcttccacttttaagatcattctttgttgaaatcttgtagaatatgggtccttctttctttgttaatgaaaacatgagaattcagtccacaata |
13446617 |
T |
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| Q |
120 |
taagaacaaaggttacagaacttcatttgtaaaataatgttctgcataacttaaac |
175 |
Q |
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| T |
13446618 |
taagaataaaggttaaagaacttcatttgtaaaataatgttctgcataacttaaac |
13446673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 13446704 - 13446742
Alignment:
| Q |
154 |
taatgttctgcataacttaaacttcatttattgtctctg |
192 |
Q |
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| T |
13446704 |
taatgttctgcataacttaaacttcatttattgtctctg |
13446742 |
T |
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