View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19438_low_9 (Length: 495)

Name: NF19438_low_9
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19438_low_9
NF19438_low_9
[»] chr4 (4 HSPs)
chr4 (228-485)||(20204638-20204895)
chr4 (99-207)||(20204499-20204607)
chr4 (99-203)||(20199640-20199744)
chr4 (1-34)||(20204401-20204434)
[»] chr5 (1 HSPs)
chr5 (251-300)||(15086722-15086770)
[»] chr6 (1 HSPs)
chr6 (273-304)||(585728-585759)
[»] chr3 (2 HSPs)
chr3 (273-304)||(18268013-18268044)
chr3 (275-304)||(14782856-14782885)
[»] chr1 (1 HSPs)
chr1 (252-304)||(13810517-13810568)


Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 228 - 485
Target Start/End: Original strand, 20204638 - 20204895
Alignment:
Q  228 gcactgagacttctgattgaagctgtgtcctgtgtccgacaccatacacatgtgattacgttcaattaattcattttgaaaagcttttatcagagtcggc 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20204638 gcactgagacttctgattgaagctgtgtcctgtgtccgacaccatacacatgtgattacgttcaattaattcattttgaaaagcttttatcagagtcggc 20204737  T
Q  328 gtgtttgtgtcagtgttttatactattagttatctctttagcaccgatacatctgatcgaagacatgtccggtgtctaactctcacatgtgtgatcacat 427  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||    
T  20204738 gtgtttgtgtcagtgttttatactattagttatctctttagcaccgatacttctgatcgaagacatgtccggtgtgtgactctcacatgtgtgatcacat 20204837  T
Q  428 acaattatgttattctctcaaattaccaccggtgttgatgttgtaattatcatctgtg 485  Q
    |||||||||||||| ||||||||||| |||||||| | |||||||| |||||||||||    
T  20204838 acaattatgttattttctcaaattacaaccggtgtcggtgttgtaactatcatctgtg 20204895  T

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Target: chr4; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 99 - 207
Target Start/End: Original strand, 20204499 - 20204607
Alignment:
Q  99 aggtgttgaggttaaggttggacaatctgtcaaagttgatcccaatgatctatgtgagggatacattcacatttctcaggttagaatttctttatgttat 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  20204499 aggtgttgaggttaaggttggacaatctgtcaaagttgatcccaatgatctatgtgaaggatacattcacatttctcaggttagaatttatttatgttat 20204598  T
Q  199 ttccatact 207  Q
    |||||||||    
T  20204599 ttccatact 20204607  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 99 - 203
Target Start/End: Original strand, 20199640 - 20199744
Alignment:
Q  99 aggtgttgaggttaaggttggacaatctgtcaaagttgatcccaatgatctatgtgagggatacattcacatttctcaggttagaatttctttatgttat 198  Q
    ||||||||||||||||| ||||||||| || ||||||||||| ||||||| ||||  ||||||||||||||||||||| || ||||||| ||||||||||    
T  20199640 aggtgttgaggttaaggctggacaatcggttaaagttgatccaaatgatcaatgtacgggatacattcacatttctcaagtaagaatttgtttatgttat 20199739  T
Q  199 ttcca 203  Q
    |||||    
T  20199740 ttcca 20199744  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 20204401 - 20204434
Alignment:
Q  1 atgccattttttcttcttcatttcgttgcgatag 34  Q
    ||||||||||||||||||||||||||||||||||    
T  20204401 atgccattttttcttcttcatttcgttgcgatag 20204434  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 300
Target Start/End: Complemental strand, 15086770 - 15086722
Alignment:
Q  251 tgtgtcctgtgtccgacaccatacacatgtgattacgttcaattaattca 300  Q
    ||||||| ||||||||||||| |||||||||||||||||||| |||||||    
T  15086770 tgtgtccggtgtccgacacca-acacatgtgattacgttcaaataattca 15086722  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 304
Target Start/End: Original strand, 585728 - 585759
Alignment:
Q  273 acacatgtgattacgttcaattaattcatttt 304  Q
    ||||||||||||||||||||||||||||||||    
T  585728 acacatgtgattacgttcaattaattcatttt 585759  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 304
Target Start/End: Original strand, 18268013 - 18268044
Alignment:
Q  273 acacatgtgattacgttcaattaattcatttt 304  Q
    ||||||||||||||||||||||||||||||||    
T  18268013 acacatgtgattacgttcaattaattcatttt 18268044  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 304
Target Start/End: Original strand, 14782856 - 14782885
Alignment:
Q  275 acatgtgattacgttcaattaattcatttt 304  Q
    ||||||||||||||||||||||||||||||    
T  14782856 acatgtgattacgttcaattaattcatttt 14782885  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 13810568 - 13810517
Alignment:
Q  252 gtgtcctgtgtccgacaccatacacatgtgattacgttcaattaattcatttt 304  Q
    |||||| ||||| ||||||  ||||||||||||||||||||| ||||||||||    
T  13810568 gtgtccggtgtctgacaccg-acacatgtgattacgttcaataaattcatttt 13810517  T

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