View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19439_low_1 (Length: 633)
Name: NF19439_low_1
Description: NF19439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19439_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 9 - 619
Target Start/End: Complemental strand, 47701633 - 47701026
Alignment:
| Q |
9 |
agcataggataaccaataagccaagatgtcgttgttctcctgggtctgaagtccgnnnnnnntattttagtgaaaataaatttgttgagaaaggagtgtg |
108 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47701633 |
agcattggataaccaataagccaagatgtcgttgttctcctgggtctgaagtccgaaaaatatattttagtgaaaataaatttgttgagaaaggagtgtg |
47701534 |
T |
|
| Q |
109 |
agaaggaaagagaactatcacgtgaaagttgagcattttaaacctcaattgcatggcctatagtttggattatacgatcaaacacacttgtacgctcaac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47701533 |
agaaggaaagagaactatcacgtgaaagttgagcattttaaacctcaattgcatggcctatagtttggattatacgatcaaacacacttgtacgctcaac |
47701434 |
T |
|
| Q |
209 |
ttcaaatgatctccaatgcaagaggcatttgtatatgatacaggcagcaattggtctattcccagcaaagcctagatgttgtgcaatacatctaatgagc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47701433 |
ttcaaatgatctccaatgcaagaggcatttgtatatgatacaggcagcaattggtctattcccagcaaagcctagatgttgtgcaatacatctaatgagc |
47701334 |
T |
|
| Q |
309 |
aactcttgattctcctgttgtttctcattcaatgacctctgtggtttatcctccacctctgtggattccctgtggttcattgatgggctatgcatatcct |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47701333 |
aactcttgattctcctgttgtttctcattcaatgacctctgtggtttatcctccacctctgtggattccctgtggttcattgatgggctatgcatatcct |
47701234 |
T |
|
| Q |
409 |
gaaaagttgatcaagtgnnnnnnngagagtcaagtccacatatacatatcaagtaagagtaatagtagtaatcaggataatctttgttaccaaatgtggc |
508 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
47701233 |
gaaaagttgatcaagtgaaaaaaagagagtcaagtccacatatacatatcaagtaagagtaa---tagtaaccaggataatctttgttaccaaatgtggc |
47701137 |
T |
|
| Q |
509 |
ggctttccttccactccaatatgtccactgtcaactctctatcgacagagataagaaaatatcataaacaaacttgaagattgattttattatcaagtat |
608 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
47701136 |
ggctttccttccactccaatatgtccactgtcaactctctatcgacagagataagaaaatatcatcaacaaacttgaagattaattttattatcaagtat |
47701037 |
T |
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| Q |
609 |
ataagattcat |
619 |
Q |
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||||||||||| |
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| T |
47701036 |
ataagattcat |
47701026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 203 - 305
Target Start/End: Original strand, 35819392 - 35819494
Alignment:
| Q |
203 |
ctcaacttcaaatgatctccaatgcaagaggcatttgtatatgatacaggcagcaattggtctattcccagcaaagcctagatgttgtgcaatacatcta |
302 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||| ||||||||| || |||||| |||| |||||||| || ||||| ||||||||||||||||| |
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| T |
35819392 |
ctcaacttcaaatgatctccaatgcaagagacatttgtctatgatacaagcggcaattagtctgttcccagccaattctagaagttgtgcaatacatcta |
35819491 |
T |
|
| Q |
303 |
atg |
305 |
Q |
| |
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||| |
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|
| T |
35819492 |
atg |
35819494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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