View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19439_low_2 (Length: 476)
Name: NF19439_low_2
Description: NF19439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19439_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 2e-72; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 71 - 241
Target Start/End: Complemental strand, 4610966 - 4610796
Alignment:
| Q |
71 |
ggctcgcgatacacattagaaattcgtattgattcgatctagttctgcattgaaatgagatatgaatggcgtgtatcgtaaggtactgataacaattgct |
170 |
Q |
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| T |
4610966 |
ggctcgcgatacacactagaaattcgtattgatttgatccagttttgcattgaaatgagatacgagtcgcatgtatcgtaaggtactgataacaattgct |
4610867 |
T |
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| Q |
171 |
atgagtacagagttgtattctttaaaagaaaccaaaccaaattctttactagatgtaaaccacttggttac |
241 |
Q |
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| T |
4610866 |
atgagtacagagttgtattctttaaaagaaaccaaaccaaattctttactagatgtaaaccacttggttac |
4610796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 327 - 460
Target Start/End: Complemental strand, 4610710 - 4610577
Alignment:
| Q |
327 |
ttccaaagcactaactaacatcattacatctttagtttcctctcaaatttctccaatactgtgacaactaaaaatgtcaagaattccatgattcttcatc |
426 |
Q |
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| T |
4610710 |
ttccaaagcactaactaacatcattacatctttagtttcctctcaaatttctccaatactgtgacaactaaaaatgtcaagaattccatgattcttcatc |
4610611 |
T |
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| Q |
427 |
ttcttgttttgtctgaaaattggatgaaggtttt |
460 |
Q |
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| T |
4610610 |
ttcttgttttgtctgaaaattggatgaaggtttt |
4610577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 4611049 - 4610997
Alignment:
| Q |
15 |
cataggaaataacttgacaaaggaaaccattagaatgaatcatgatttaccat |
67 |
Q |
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| T |
4611049 |
cataggaaataacttgacaaaggaaaccattaaaataaatcatgatttaccat |
4610997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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