View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19439_low_4 (Length: 316)
Name: NF19439_low_4
Description: NF19439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19439_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 25338941 - 25338664
Alignment:
| Q |
19 |
atgtatgtcagtgttagactcaaccagatatggggcccagtagaattctatactagcattatattcctgttacaaacattcaagtatctgtattagtact |
118 |
Q |
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| T |
25338941 |
atgtatgtcagtgttagactcaaccagatatggggcccagtagaattctatactagcattatattcctgttacaaacattcaagtatctgtattagtact |
25338842 |
T |
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| Q |
119 |
atgttctattcagaagatttccttattgaatttgtttaagccatgtttggataaacggctaaattaagcgtttattatgttagattattgaatatgcatc |
218 |
Q |
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| T |
25338841 |
atgttctattcagaagatttccttattgaatttgtttaagccatgtttggataaacggctaaattaagcgtttattatgttagattattgaatatgcatc |
25338742 |
T |
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| Q |
219 |
aataccttgacttcgaagactgaatgaacaacccctcttttcatagatttctgattttgaggtatgatccattctacc |
296 |
Q |
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| T |
25338741 |
aataccttgacttcgaagactgaatgaacaacccctcttttcatagatttctgattttgaggtatgatccattctacc |
25338664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 5231578 - 5231509
Alignment:
| Q |
17 |
atatgtatgtcagtgttagactcaaccagatatggggcccagtagaattctatactagcattatattcct |
86 |
Q |
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||||| || ||||| || ||||| || ||| |||| ||||| |||||||||||| ||||||||||||||| |
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| T |
5231578 |
atatgaatatcagtattggactccacaagaaatggtgcccaatagaattctatagtagcattatattcct |
5231509 |
T |
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