View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19439_low_6 (Length: 213)

Name: NF19439_low_6
Description: NF19439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19439_low_6
NF19439_low_6
[»] chr3 (2 HSPs)
chr3 (66-200)||(32368391-32368525)
chr3 (21-111)||(32368534-32368625)
[»] chr4 (1 HSPs)
chr4 (21-189)||(26076348-26076517)
[»] chr1 (1 HSPs)
chr1 (21-189)||(4958422-4958591)
[»] chr2 (1 HSPs)
chr2 (116-189)||(12370874-12370945)
[»] chr7 (1 HSPs)
chr7 (108-173)||(5243245-5243310)


Alignment Details
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 66 - 200
Target Start/End: Complemental strand, 32368525 - 32368391
Alignment:
Q  66 tgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctagagggatactctgattcagactgatgtggagatagaatggataggag 165  Q
    |||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  32368525 tgaagtttggcacgatgtttccagctactaacaagaaaggagagtctaagctagagggatactctgattcagaccggtgtggagatagaatggataggag 32368426  T
Q  166 aagcacttatggctacctattcaaattaaatgatg 200  Q
    ||| |||| ||||| |||||||||||| |||||||    
T  32368425 aagtacttctggctgcctattcaaattcaatgatg 32368391  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 32368625 - 32368534
Alignment:
Q  21 catctcgctgcagctaaaagaatactgagaaatgtgaaagga-ccttgaagtttggcctgatgtttccagctactaacaagaaaagagaggc 111  Q
    |||||| ||| ||||||||||||||||||| ||||||||||| || ||||||||| |||||||||||||||||||||||||||| |||||||    
T  32368625 catctcactgtagctaaaagaatactgagatatgtgaaaggaaccctgaagtttgccctgatgtttccagctactaacaagaaaggagaggc 32368534  T

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Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 21 - 189
Target Start/End: Original strand, 26076348 - 26076517
Alignment:
Q  21 catctcgctgcagctaaaagaatactgagaaatgtgaaagg-accttgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctag 119  Q
    |||||| ||||||||||||||||| ||||| |||||||||| || ||||||||||||||| | ||||||||| | || ||   | |||| ||| |  |||    
T  26076348 catctcactgcagctaaaagaatattgagatatgtgaaaggtacattgaagtttggcctgttatttccagctgcaaataaagtaggagaagctgaattag 26076447  T
Q  120 agggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaa 189  Q
    |||||||||||||||||||||| |||| ||||| |||||||||||  |||||||||||||||||||||||    
T  26076448 agggatactctgattcagactggtgtgaagatataatggataggaagagcacttatggctacctattcaa 26076517  T

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Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 21 - 189
Target Start/End: Complemental strand, 4958591 - 4958422
Alignment:
Q  21 catctcgctgcagctaaaagaatactgagaaatgtgaaagg-accttgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctag 119  Q
    |||||| ||||||| ||||| ||| ||||| |||||||||| ||  |||||||||||||| | || ||| || | |||||  || |||| ||| | ||||    
T  4958591 catctcactgcagcaaaaaggatattgagacatgtgaaaggcacactgaagtttggcctgttattcccaactgcaaacaaagaaggagaagctgaactag 4958492  T
Q  120 agggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaa 189  Q
    |||||||||||||||||||||| |||||||||||||||||||| | |||||| | | |||||||||||||    
T  4958491 agggatactctgattcagactggtgtggagatagaatggatagaaaaagcacctttagctacctattcaa 4958422  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 12370874 - 12370945
Alignment:
Q  116 ctagagggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaa 189  Q
    |||||||||||||||||||||||||| ||||||||||||||||  |||| |||||| | | |||||||||||||    
T  12370874 ctagagggatactctgattcagactggtgtggagatagaatgg--aggaaaagcacctctagctacctattcaa 12370945  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 5243245 - 5243310
Alignment:
Q  108 aggctaagctagagggatactctgattcagactgatgtggagatagaatggataggagaagcactt 173  Q
    ||||||||||||| |||||||| ||||| ||||| |||||| | ||||||||||| ||||||||||    
T  5243245 aggctaagctagaaggatactcagattctgactggtgtggatagagaatggatagaagaagcactt 5243310  T

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