View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19439_low_7 (Length: 207)

Name: NF19439_low_7
Description: NF19439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19439_low_7
NF19439_low_7
[»] chr6 (5 HSPs)
chr6 (1-174)||(7673046-7673220)
chr6 (1-194)||(34957041-34957230)
chr6 (1-174)||(7656335-7656508)
chr6 (8-194)||(1569583-1569767)
chr6 (22-194)||(12591232-12591405)
[»] chr7 (5 HSPs)
chr7 (8-194)||(15746544-15746728)
chr7 (151-194)||(13931849-13931892)
chr7 (27-126)||(44212769-44212868)
chr7 (144-194)||(26336607-26336657)
chr7 (129-194)||(13926225-13926290)
[»] chr2 (6 HSPs)
chr2 (1-126)||(18457747-18457873)
chr2 (15-174)||(43881948-43882107)
chr2 (129-193)||(12524118-12524182)
chr2 (151-194)||(12521370-12521413)
chr2 (153-194)||(15573445-15573486)
chr2 (156-192)||(15570086-15570122)
[»] scaffold0604 (1 HSPs)
scaffold0604 (25-139)||(7286-7400)
[»] chr5 (1 HSPs)
chr5 (1-95)||(11240890-11240985)
[»] chr8 (4 HSPs)
chr8 (22-108)||(45482962-45483048)
chr8 (1-78)||(129999-130077)
chr8 (151-194)||(32057270-32057313)
chr8 (153-192)||(34909105-34909144)
[»] chr1 (1 HSPs)
chr1 (1-79)||(48735013-48735092)
[»] chr4 (2 HSPs)
chr4 (25-194)||(47335970-47336140)
chr4 (153-192)||(26885852-26885891)
[»] chr3 (2 HSPs)
chr3 (153-192)||(51859028-51859067)
chr3 (152-194)||(11758861-11758903)


Alignment Details
Target: chr6 (Bit Score: 119; Significance: 5e-61; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 7673046 - 7673220
Alignment:
Q  1 ttgctactctgcattttcagatttggggg-tgtattcagcaaaaataataaaaccaatactttctattaaaatatgtttcattttattattgatttaatt 99  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7673046 ttgcttctctgcattttcagatttgggggatgtattcagcaaaaacaataaaaccaatattttctattaaaatatgtttcattttattattgatttaatt 7673145  T
Q  100 ttagcaggtaatccaaccccaccaaaattgccacctgtccagaattttgtgagttgtgcatggtgaacaaatctt 174  Q
    |||| |||||||| |||||||||||||  ||||||| |||| ||||||||| |||| |||||||| |||||||||    
T  7673146 ttagtaggtaatcaaaccccaccaaaaccgccacctatccaaaattttgtgggttgggcatggtgcacaaatctt 7673220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 34957230 - 34957041
Alignment:
Q  1 ttgctactctgcattttcagatttgggggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgtttcattttattattgatttaattt 100  Q
    |||||||||||| ||||||||||||  ||||||||||||||||| ||||||||||||||||| ||    |||||| ||||||||||||||||||||||||    
T  34957230 ttgctactctgctttttcagatttgaaggtgtattcagcaaaaacaataaaaccaatacttttta----aatatggttcattttattattgatttaattt 34957135  T
Q  101 tagcaggtaatccaaccccaccaaaattgccacctgtccagaattttgtgagttgtgcatggtgaacaaatctttcccttgtgcatactaaatg 194  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||||| || |||||||||| || |||||| |||||||| |||||||||||||    
T  34957134 tagcaggtaatccaaccccaccaaaaccgccacttgtccagaattttatgggttgtgcatgctgcacaaatttttcccttatgcatactaaatg 34957041  T

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Target: chr6; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 7656508 - 7656335
Alignment:
Q  1 ttgctactctgcattttcagatttg-ggggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgtttcattttattattgatttaatt 99  Q
    |||||||| |||||||||||||||| |||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  7656508 ttgctactttgcattttcagatttgaggggtgtattaagcaaaaacaataaaaccaatattttctattaaaatatgtttcattttattatttatttaatt 7656409  T
Q  100 ttagcaggtaatccaaccccaccaaaattgccacctgtccagaattttgtgagttgtgcatggtgaacaaatctt 174  Q
    |||| |||||| |||| || ||||||| |||||||||||||||||||| || |||| |||||||| |||||||||    
T  7656408 ttagtaggtaa-ccaaacctaccaaaactgccacctgtccagaattttctgggttgcgcatggtgcacaaatctt 7656335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 1569767 - 1569583
Alignment:
Q  8 tctgcattttcagatttgggggtgtattcagcaaaaataataaaaccaatactttctattaaaatatg-tttcattttattattgatttaattttagcag 106  Q
    ||||||||||||| ||||||||||| | ||||||||| ||||||||||||| ||||||||| |||||| |||| |||||||| ||||||| ||| |||||    
T  1569767 tctgcattttcag-tttgggggtgtttccagcaaaaacaataaaaccaatattttctattataatatgttttccttttattaatgatttattttcagcag 1569669  T
Q  107 gtaatccaaccccaccaaaattgccacctgtccagaattttgtgagttgtgcatggtgaacaaatctttcccttgtgcatactaaatg 194  Q
    ||||||   | || ||||||  |||| ||||||| || | | |   |||||||||||| ||||||||||||||||||||| |||||||    
T  1569668 gtaatc--tctcccccaaaaccgccagctgtccaaaaatctttcccttgtgcatggtgcacaaatctttcccttgtgcatgctaaatg 1569583  T

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Target: chr6; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 12591405 - 12591232
Alignment:
Q  22 tttgggggtgtattcagcaaaaataataaaaccaa-tactttctattaaaatatgtttcattttattattgatttaattttagcaggtaatccaacccca 120  Q
    ||||||||||||| ||||||||| ||||||||||| || |||  |||| |||||||||| |||||||||| ||||| ||| ||||||| | || ||||||    
T  12591405 tttgggggtgtatccagcaaaaacaataaaaccaaatatttttcattataatatgtttccttttattatttatttattttcagcaggtcaccccacccca 12591306  T
Q  121 ccaaaattgccacctgtccagaattttgtgagttgtgcatggtgaacaaatctttcccttgtgcatactaaatg 194  Q
    |||||| ||||||||||||| ||   |||   |||||||||||| |||||| || |  ||||||||| ||||||    
T  12591305 ccaaaactgccacctgtccataaaagtgttgtttgtgcatggtgcacaaattttgcatttgtgcatattaaatg 12591232  T

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Target: chr7 (Bit Score: 65; Significance: 9e-29; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 15746544 - 15746728
Alignment:
Q  8 tctgcattttcagatttgggggtgtattcagcaaaaataataaaaccaatactttctattaaaatatg-tttcattttattattgatttaattttagcag 106  Q
    ||||||||||||| ||||||||||| | ||||||||| ||||||||||||| ||||||||| |||||| |||| |||||||| ||||||| ||| |||||    
T  15746544 tctgcattttcag-tttgggggtgtttccagcaaaaacaataaaaccaatattttctattataatatgttttccttttattaatgatttattttcagcag 15746642  T
Q  107 gtaatccaaccccaccaaaattgccacctgtccagaattttgtgagttgtgcatggtgaacaaatctttcccttgtgcatactaaatg 194  Q
    ||||||   | || ||||||  |||| ||||||| || | | |   |||||||||||| ||||||||||||||||||||| |||||||    
T  15746643 gtaatc--tctcccccaaaaccgccagctgtccaaaaatctttcccttgtgcatggtgcacaaatctttcccttgtgcatgctaaatg 15746728  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 13931849 - 13931892
Alignment:
Q  151 agttgtgcatggtgaacaaatctttcccttgtgcatactaaatg 194  Q
    |||||||||||||| ||||||||||||||||||||| |||||||    
T  13931849 agttgtgcatggtgcacaaatctttcccttgtgcatgctaaatg 13931892  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 44212868 - 44212769
Alignment:
Q  27 gggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgtttcattttattattgatttaattttagcaggtaatccaaccccaccaaaa 126  Q
    ||||||||  |||||||| ||||||||||||| |||  |||| |||||||||  |||||||| || |||| |||||||| || | || ||||||||||||    
T  44212868 gggtgtatctagcaaaaacaataaaaccaatatttttcattataatatgttttcttttattaatggtttatttttagcaagtcaccccaccccaccaaaa 44212769  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 26336607 - 26336657
Alignment:
Q  144 ttttgtgagttgtgcatggtgaacaaatctttcccttgtgcatactaaatg 194  Q
    ||||||| ||||||||||||| |||||||||| |||||||||| |||||||    
T  26336607 ttttgtgggttgtgcatggtgcacaaatcttttccttgtgcatgctaaatg 26336657  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 13926290 - 13926225
Alignment:
Q  129 gccacctgtccagaattttgtgagttgtgcatggtgaacaaatctttcccttgtgcatactaaatg 194  Q
    |||||||||||||||   |||  ||||||||||||| ||||||||||| ||||||||| |||||||    
T  13926290 gccacctgtccagaaaagtgtaggttgtgcatggtgtacaaatctttctcttgtgcatgctaaatg 13926225  T

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Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 18457747 - 18457873
Alignment:
Q  1 ttgctactctgcattttcagatttg-ggggtgtattcagcaaaaataataaaaccaatactttct-attaaaatatgtttcattttattattgatttaat 98  Q
    ||||| |||||||||||| |||||| ||||||||| ||||||||| ||||||||||||| ||||| |||| |||||||||  |||||||| | ||||| |    
T  18457747 ttgcttctctgcattttcggatttgaggggtgtatacagcaaaaacaataaaaccaata-tttctcattataatatgttttcttttattaattatttatt 18457845  T
Q  99 tttagcaggtaatccaaccccaccaaaa 126  Q
    |||||||||| |||||||||||||||||    
T  18457846 tttagcaggtcatccaaccccaccaaaa 18457873  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 43881948 - 43882107
Alignment:
Q  15 tttcagatttgggggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgtttcattttattattgatttaattttagcaggtaatcca 114  Q
    |||||| ||||||||||||| ||| ||||  |||| |||||||| |||| |||| |||||||||| |||||||| || |||| ||| ||||||| |   |    
T  43881948 tttcagttttgggggtgtatccagtaaaagcaatataaccaatattttccattataatatgtttccttttattaatggtttattttcagcaggtcaaata 43882047  T
Q  115 accccaccaaaattgccacctgtccagaattttgtgagttgtgcatggtgaacaaatctt 174  Q
    || ||  ||||| |||||||||||||||| ||||||  ||| ||||| || |||||||||    
T  43882048 acacccacaaaactgccacctgtccagaaatttgtggtttgggcatgatgcacaaatctt 43882107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 12524118 - 12524182
Alignment:
Q  129 gccacctgtccagaattttgtgagttgtgcatggtgaacaaatctttcccttgtgcatactaaat 193  Q
    |||||||||||||||   |||  ||||||||||||| ||||||||||| ||||||||| ||||||    
T  12524118 gccacctgtccagaaaagtgtaggttgtgcatggtgcacaaatctttctcttgtgcatgctaaat 12524182  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 194
Target Start/End: Complemental strand, 12521413 - 12521370
Alignment:
Q  151 agttgtgcatggtgaacaaatctttcccttgtgcatactaaatg 194  Q
    ||||||||||| || ||||||||||||||||||||| |||||||    
T  12521413 agttgtgcatgatgcacaaatctttcccttgtgcatgctaaatg 12521370  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 15573445 - 15573486
Alignment:
Q  153 ttgtgcatggtgaacaaatctttcccttgtgcatactaaatg 194  Q
    |||||||||||| ||||||||| ||||||||||| |||||||    
T  15573445 ttgtgcatggtgcacaaatcttccccttgtgcatcctaaatg 15573486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 15570122 - 15570086
Alignment:
Q  156 tgcatggtgaacaaatctttcccttgtgcatactaaa 192  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  15570122 tgcatggtgcacaaatctttcccttgtgcatgctaaa 15570086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 7400 - 7286
Alignment:
Q  25 gggggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgtttcattttattattgatttaattttagcaggtaatccaaccccaccaa 124  Q
    |||||||||| ||||||||| ||||||||||||| |||| |||| |||||||||| |||||||||| ||||| ||| ||||||| | || ||||||||||    
T  7400 gggggtgtatccagcaaaaacaataaaaccaatattttccattataatatgtttccttttattatttatttattttcagcaggtcaccccaccccaccaa 7301  T
Q  125 aattgccacctgtcc 139  Q
    || || |||||||||    
T  7300 aactgtcacctgtcc 7286  T

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Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 11240890 - 11240985
Alignment:
Q  1 ttgctactctgcattttcagattt-gggggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgtttcattttattattgattt 95  Q
    |||||||||||||||| || |||| |||||||| ||||||||||| ||||||||||||| |||| |||| |||||||||| |||||||| ||||||    
T  11240890 ttgctactctgcatttccaaatttcgggggtgtcttcagcaaaaacaataaaaccaatattttccattataatatgtttccttttattaatgattt 11240985  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 45482962 - 45483048
Alignment:
Q  22 tttgggggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgtttcattttattattgatttaattttagcaggt 108  Q
    ||||||||||||| ||| ||||| ||||||||||||| |||  |||| |||||||||| |||||||||| ||||| ||| |||||||    
T  45482962 tttgggggtgtatccagaaaaaacaataaaaccaatatttttcattataatatgtttccttttattatttatttattttcagcaggt 45483048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 129999 - 130077
Alignment:
Q  1 ttgctactctgcattttcaga-tttgggggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgttt 78  Q
    ||||||||||||||||||||| |||||||||||   ||||||||| ||||||| ||||| |||| |||| |||||||||    
T  129999 ttgctactctgcattttcagattttgggggtgtcaccagcaaaaacaataaaatcaatattttcaattataatatgttt 130077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 194
Target Start/End: Complemental strand, 32057313 - 32057270
Alignment:
Q  151 agttgtgcatggtgaacaaatctttcccttgtgcatactaaatg 194  Q
    |||||||||||||| ||||||||||||||||||||| |||||||    
T  32057313 agttgtgcatggtgcacaaatctttcccttgtgcatgctaaatg 32057270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 34909105 - 34909144
Alignment:
Q  153 ttgtgcatggtgaacaaatctttcccttgtgcatactaaa 192  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  34909105 ttgtgcatggtgcacaaatctttcccttgtgcatgctaaa 34909144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 48735092 - 48735013
Alignment:
Q  1 ttgctactctgcattttcagatttgg-gggtgtattcagcaaaaataataaaaccaatactttctattaaaatatgtttc 79  Q
    |||||||||||||||||||| ||||| ||||||   ||||||||| ||||||||||||| |||| |||| ||||||||||    
T  48735092 ttgctactctgcattttcagttttggagggtgtcaccagcaaaaacaataaaaccaatattttccattataatatgtttc 48735013  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 47336140 - 47335970
Alignment:
Q  25 gggggtgtattcagcaaaaataataaaaccaa-tactttctattaaaatatgtttcattttattattgatttaattttagcaggtaatccaaccccacca 123  Q
    |||||||||  || |||||| ||||||||||| || |||| |||| |||||||||  |||||||||| ||||| ||| ||||||| | || |||||||||    
T  47336140 gggggtgtaaccaccaaaaacaataaaaccaaatattttccattataatatgttttcttttattatttatttattttcagcaggtcaccccaccccacca 47336041  T
Q  124 aaattgccacctgtccagaattttgtgagttgtgcatggtgaacaaatctttcccttgtgcatactaaatg 194  Q
    ||| || |||| ||||| ||   |||   |||||||||||| ||||||| | |  |||||||||| |||||    
T  47336040 aaactgtcaccagtccataaaagtgttgtttgtgcatggtgcacaaatcatgcatttgtgcataccaaatg 47335970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 192
Target Start/End: Complemental strand, 26885891 - 26885852
Alignment:
Q  153 ttgtgcatggtgaacaaatctttcccttgtgcatactaaa 192  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  26885891 ttgtgcatggtgcacaaatctttcccttgtgcatgctaaa 26885852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 51859028 - 51859067
Alignment:
Q  153 ttgtgcatggtgaacaaatctttcccttgtgcatactaaa 192  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  51859028 ttgtgcatggtgcacaaatctttcccttgtgcatgctaaa 51859067  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 194
Target Start/End: Complemental strand, 11758903 - 11758861
Alignment:
Q  152 gttgtgcatggtgaacaaatctttcccttgtgcatactaaatg 194  Q
    ||||||||||||| |||||||||| |||||||||| |||||||    
T  11758903 gttgtgcatggtgcacaaatcttttccttgtgcatgctaaatg 11758861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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