View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1943_high_10 (Length: 236)
Name: NF1943_high_10
Description: NF1943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1943_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 3616078 - 3615945
Alignment:
| Q |
9 |
gagcacagaatcatcaatagcatcctctttcatcgtcctttatttaatttacaagggtcatataatgtttaaaatccatcgtcccttatatgtattttca |
108 |
Q |
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| T |
3616078 |
gagcacagaatcatcaatagcatcctctttcatcgtcctttatttaatttagaagggtcatataatgtttaaaatccattgtcccttatatgtattttca |
3615979 |
T |
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| Q |
109 |
tcatcctttatttttccctgttggagttctaaga |
142 |
Q |
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| T |
3615978 |
tcatcctttatttttccctgttggagttctaaga |
3615945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 52077363 - 52077230
Alignment:
| Q |
9 |
gagcacagaatcatcaatagcatcctctttcatcgtcctttatttaatttacaagggtcatataatgtttaaaatccatcgtcccttatatgtattttca |
108 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |
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| T |
52077363 |
gagcacagaatcatcaatagcgtcctctttcatcgtcctttatttaatttacaagggtcatataataattaaaatcaattgtcccttatatgtattttca |
52077264 |
T |
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| Q |
109 |
tcatcctttatttttccctgttggagttctaaga |
142 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
52077263 |
tcatcctttatttttccctgttggagttctaaga |
52077230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 16756775 - 16756908
Alignment:
| Q |
9 |
gagcacagaatcatcaatagcatcctctttcatcgtcctttatttaatttacaagggtcatataatgtttaaaatccatcgtcccttatatgtattttca |
108 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16756775 |
gagcacaaaatcatcaataacatcctctttcatcgtcctttatttaatttacaagggtcatataatgtttaaaatccattgtcccttatatgtattttca |
16756874 |
T |
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| Q |
109 |
tcatcctttatttttccctgttggagttctaaga |
142 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
16756875 |
tcatcctttatttttccctgttggagttctaaga |
16756908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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