View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1943_high_5 (Length: 316)

Name: NF1943_high_5
Description: NF1943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1943_high_5
NF1943_high_5
[»] chr6 (6 HSPs)
chr6 (137-300)||(9998741-9998904)
chr6 (147-300)||(10004437-10004590)
chr6 (135-301)||(10012979-10013145)
chr6 (142-297)||(9991589-9991744)
chr6 (16-61)||(9998906-9998951)
chr6 (38-96)||(33433750-33433808)
[»] chr7 (1 HSPs)
chr7 (45-102)||(10386942-10386999)
[»] chr5 (1 HSPs)
chr5 (15-71)||(16230809-16230865)
[»] chr2 (1 HSPs)
chr2 (45-85)||(36501906-36501946)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 7e-83; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 137 - 300
Target Start/End: Complemental strand, 9998904 - 9998741
Alignment:
Q  137 ctctgagctgatcgactaacctggctcccgagctgatcggcaaggctgtaatcagccaatggattttcaaataggcccataacaaactttactctcaaaa 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9998904 ctctgagctgatcgactaacctggctcccgagctgatcggcaaggctgtaatcagccaatggattttcaaataggcccataacaaacttgactctcaaaa 9998805  T
Q  237 ttctcttcactgcatcatcaattctactcataggtatgacattctttttcactagtaaagttag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9998804 ttctcttcactgcatcatcaattctactcataggtatgacattctttttcactagtaaggttag 9998741  T

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Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 147 - 300
Target Start/End: Complemental strand, 10004590 - 10004437
Alignment:
Q  147 atcgactaacctggctcccgagctgatcggcaaggctgtaatcagccaatggattttcaaataggcccataacaaactttactctcaaaattctcttcac 246  Q
    ||||||||||| |||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10004590 atcgactaaccgggctaccgatttgatcggcaaggctgtaatcagccaatggattttcaaataggcccataacaaacttcactctcaaaattctcttcac 10004491  T
Q  247 tgcatcatcaattctactcataggtatgacattctttttcactagtaaagttag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10004490 tgcatcatcaattctactcataggtatgacattctttttcactagtaaggttag 10004437  T

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Target: chr6; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 135 - 301
Target Start/End: Complemental strand, 10013145 - 10012979
Alignment:
Q  135 aactctgagctgatcgactaacctggctcccgagctgatcggcaaggctgtaatcagccaatggattttcaaataggcccataacaaactttactctcaa 234  Q
    ||||||||| ||||||||||||| |||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  10013145 aactctgagttgatcgactaaccgggctcccgatttgatcggcaaggctgtaatcagctaatggattttcaaataggcccataacaaacttgactctcaa 10013046  T
Q  235 aattctcttcactgcatcatcaattctactcataggtatgacattctttttcactagtaaagttagt 301  Q
    ||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||| | ||||||    
T  10013045 aattctctttactgcatcatcaattctactcattggtatggcattctttttcactagtgaggttagt 10012979  T

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Target: chr6; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 142 - 297
Target Start/End: Complemental strand, 9991744 - 9991589
Alignment:
Q  142 agctgatcgactaacctggctcccgagctgatcggcaaggctgtaatcagccaatggattttcaaataggcccataacaaactttactctcaaaattctc 241  Q
    |||| |||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  9991744 agctcatcgactaacctggctcccgagttgatcggtaaggctgtaatctgccaatggattttcaaatagtcccataacaaacttgactctcaaaattctc 9991645  T
Q  242 ttcactgcatcatcaattctactcataggtatgacattctttttcactagtaaagt 297  Q
    ||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||    
T  9991644 ttcactgcatcatcaattctactcataggtatggcattgcttttcactagtaaagt 9991589  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 9998951 - 9998906
Alignment:
Q  16 caaacattttgaacgatcttacgattactattgattgacagtgtaa 61  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  9998951 caaacattttaaacgatcttacgattactattgattgacagtgtaa 9998906  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 33433808 - 33433750
Alignment:
Q  38 gattactattgattgacagtgtaaaaatctttacacttacagtgtatacaaataaaatc 96  Q
    |||||| ||||||||| |||||||||||||||||| | | |||||||| |||| |||||    
T  33433808 gattacgattgattgagagtgtaaaaatctttacattgagagtgtataaaaatgaaatc 33433750  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 10386999 - 10386942
Alignment:
Q  45 attgattgacagtgtaaaaatctttacacttacagtgtatacaaataaaatccaaatt 102  Q
    ||||||||||| ||||||| |||||||||| | ||| |||| |||| |||||||||||    
T  10386999 attgattgacattgtaaaattctttacactaaaagtatatataaatcaaatccaaatt 10386942  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 16230809 - 16230865
Alignment:
Q  15 tcaaacattttgaacgatcttacgattactattgattgacagtgtaaaaatctttac 71  Q
    ||||||||||| || ||||   ||||||| || ||||||||||||||||||||||||    
T  16230809 tcaaacattttaaatgatcagtcgattacgatcgattgacagtgtaaaaatctttac 16230865  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 36501946 - 36501906
Alignment:
Q  45 attgattgacagtgtaaaaatctttacacttacagtgtata 85  Q
    |||| |||||||||||||||| |||||||| ||||||||||    
T  36501946 attggttgacagtgtaaaaatatttacactgacagtgtata 36501906  T

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