View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1943_high_6 (Length: 298)
Name: NF1943_high_6
Description: NF1943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1943_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 6829164 - 6828881
Alignment:
| Q |
13 |
aaaatcttgattaaatgaaccctattataacttcaatgataaattcaaacttctggttgcacactagttgactcaattagtggttaacaagtgtgaaaat |
112 |
Q |
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| T |
6829164 |
aaaatcttgattaaatgaaccctattataacttcaatgataaattcaaacttctggttgcacactagttgattcaattactggttaacaagtgtgaaaat |
6829065 |
T |
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| Q |
113 |
caga-----------------ttatctaaaattattttgaaataaaagcaatatagttggattctagattacacagcacaaactaacaccgtgtcaatga |
195 |
Q |
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|||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6829064 |
cagagaaggtcataaaccagattatccaaaattattttgaaataaaagcaatataattggattctagattacacagcacaaactaacaccgtgtcaatga |
6828965 |
T |
|
| Q |
196 |
tgtaatgaaattattttgacacatttgatataaaggtgtgattttctattataccagaactcatgtgacccttatcctgtgaaat |
280 |
Q |
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| T |
6828964 |
tgtcatgaaattattttgacacatttgatataagggtgtgattttctattataccagaactcatgtga-ccttatcctgtgaaat |
6828881 |
T |
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