View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1943_low_1 (Length: 641)
Name: NF1943_low_1
Description: NF1943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1943_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 13 - 625
Target Start/End: Complemental strand, 3234315 - 3233705
Alignment:
| Q |
13 |
aatatcccctaagagagaaaaaatcaccggagatgaacaaagctacaaccacctacatagcaacattggtgccgcaatcaacatctcaaaactaagctac |
112 |
Q |
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| T |
3234315 |
aatatcccctaagagagaaaaaatcaccggagatgaacaaagctacaaccacctacatagcaacattggtgccgcaatcaacatctcaaaactaagctac |
3234216 |
T |
|
| Q |
113 |
aacaacttgccttcgacgtagttgttgtactttacatcattgttgtcagtcgctgccgacattattattgtcgttgtcacacacaactacataaggctgc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3234215 |
aacaacttgccttcgacgtagttgttgtactttacatcattgttgtcagtcgctgccgacattattattgtcgttgtcacacacaactacataaggctgc |
3234116 |
T |
|
| Q |
213 |
caccatcatacgtcgttgctatcattctctccatctccggtgtcactatcaccatcgccgttgacgttgccgttaactgacactgtctaggggagttcaa |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3234115 |
caccatcatacgtcgttgctatcattctctccatctccggtgtcactatcaccatcgccgttgacgttgtcgttaactgacactgtctaggggagttcaa |
3234016 |
T |
|
| Q |
313 |
attatgggaggaagggagttcggtggtagcttgcaagagaaggggtgatgatgtttaacaaggaagatgcag-tttataatacaagagaattcaattaag |
411 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3234015 |
attatgggaagaagggagttcggtggtagcttgcaagagaaggggtgacgatgtttaacaaggaagatgcagttttataatacaagagaattcaattaag |
3233916 |
T |
|
| Q |
412 |
ggtgtgcgatgatgccacgtcattgtcgtgggagttgcgcgacaataagtgtcgtgcacattagcactaaatatgtttgcatattcatatttcataccta |
511 |
Q |
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| T |
3233915 |
ggtgtgc---gatgccacgtcattgtcgtgggagttgcgcgacaataagtgtcgtgcacattagcactaaatatgtttgcatattcatatttcataccta |
3233819 |
T |
|
| Q |
512 |
tattgcatacatgttctttcttaattaaaatttgctaaaactagagaataagtaagcgcattttctcatacatcattgtaaattcacttattacatttaa |
611 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
3233818 |
tattgcatacatgttcattcttaattaaaatttgctaaaactagagaataagtaagcacactttctcatacatcattgtaaattcacttattacatttaa |
3233719 |
T |
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| Q |
612 |
aggatagtttcctt |
625 |
Q |
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|||||||||||||| |
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| T |
3233718 |
aggatagtttcctt |
3233705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 324 - 356
Target Start/End: Complemental strand, 45243291 - 45243259
Alignment:
| Q |
324 |
aagggagttcggtggtagcttgcaagagaaggg |
356 |
Q |
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| T |
45243291 |
aagggagttcggtggtagcgtgcaagagaaggg |
45243259 |
T |
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