View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1943_low_11 (Length: 266)
Name: NF1943_low_11
Description: NF1943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1943_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 29 - 250
Target Start/End: Complemental strand, 5719776 - 5719555
Alignment:
| Q |
29 |
caaatgttattctatgttttttgttcctcttacaatcaatgagactcccaaaaaagtccaatcccagaaactnnnnnnntaaagttactccaatcaactt |
128 |
Q |
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| T |
5719776 |
caaatgttattctatgttttttgttcctcttacaatcaatgagactcccaaaaaagtccaatcccagaaactaaaaaaataaagttactccaatcaactt |
5719677 |
T |
|
| Q |
129 |
aaccaggaaaatgaaaactacaacaattgatttcaattctttccgttccattttccaccatccaaacacgatcaatgtcagacttcaataaaaccagtca |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5719676 |
aaccaggaaaatgaaaactacaacaattgatttcaattctttccgttccattttccaccatccaaacacgatcaatgtcagacttcaataaaaccagtca |
5719577 |
T |
|
| Q |
229 |
tcctaagaatcgaattcctaac |
250 |
Q |
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|||||||||||||||||||||| |
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| T |
5719576 |
tcctaagaatcgaattcctaac |
5719555 |
T |
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