View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1943_low_12 (Length: 255)
Name: NF1943_low_12
Description: NF1943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1943_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 28952671 - 28952581
Alignment:
| Q |
54 |
taacataataagactatcatcttcaagcaaattattttacatttaggaattcaatttttgttttatacttattagtttgggcccaaattgt |
144 |
Q |
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| T |
28952671 |
taacgtaataagactatcatcttcaagcaaattattttacatttaggaattcaatttttgttttatacttattagtttgggcccaaattgt |
28952581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 28952461 - 28952412
Alignment:
| Q |
197 |
caccatcaattttgcgaaatttcaaaaaa-cccttgattttcaccctatg |
245 |
Q |
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| T |
28952461 |
caccatcaattttgcaaaatttcaaaaaaccccttgattttcaccctatg |
28952412 |
T |
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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 51880563 - 51880483
Alignment:
| Q |
66 |
actatcatcttcaagcaaattatttt-aca-tttaggaattcaatttttgttttat--acttattagtttgggcccaaatt |
142 |
Q |
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| T |
51880563 |
actatcatattcaagaaaaatattttcacactttaggaattcaattttttttatatgtacttattagttagggcccaaatt |
51880483 |
T |
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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 4593374 - 4593469
Alignment:
| Q |
48 |
attttctaacataataaga-ctatcatcttcaagcaaattatttt-aca-tttaggaattcaatttttgttttatacttattagtttgggcccaaa |
140 |
Q |
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| T |
4593374 |
atttcctaacataataaaaactatcatcttcaagaaaattatttttacactttaggaattcaattttttttttgtacttattagttagggcccaaa |
4593469 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 19020179 - 19020073
Alignment:
| Q |
32 |
atgtttttgttagattattttctaacataataaga-ctatcatcttcaagcaaattatttt--acatttaggaattcaatttttgttttatacttattag |
128 |
Q |
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| T |
19020179 |
atgtttttattagattatgtcttaacataataaaaactatcatcttcaaacaaattattttcaaactttatgaattcaaattttttgatatacttattag |
19020080 |
T |
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| Q |
129 |
tttgggc |
135 |
Q |
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| T |
19020079 |
ttagggc |
19020073 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 33023995 - 33023934
Alignment:
| Q |
48 |
attttctaacataataaga-ctatcatcttcaagcaaattatttt-acatttaggaattcaa |
107 |
Q |
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| T |
33023995 |
attttctaacgtaataaaaactatcatcttcaagaaaattattttcacacttaggaattcaa |
33023934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 36036268 - 36036205
Alignment:
| Q |
28 |
tttgatgtttttgttagattattttctaacataat-aagactatcatcttcaagcaaattatttt |
91 |
Q |
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| T |
36036268 |
tttgatgtttttgttagataatttt-taacatagtaaaaactatcatttttaagcaaattatttt |
36036205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 33019381 - 33019316
Alignment:
| Q |
28 |
tttgatgtttttgttagattattttctaacataataag-actatcatcttcaagcaaattatttta |
92 |
Q |
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| T |
33019381 |
tttgatgtttttgttagataattttgtaatgtagtaaacactatcatgttcaagcaaattatttta |
33019316 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 78348 - 78284
Alignment:
| Q |
28 |
tttgatgtttttgttagattattttctaacataat-aagactatcatcttcaagcaaattatttt |
91 |
Q |
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||||||||| || |||||||||||| |||| |||| || ||||| ||||| |||||||||||||| |
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| T |
78348 |
tttgatgttcttattagattattttttaacctaataaaaactattatctttaagcaaattatttt |
78284 |
T |
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