View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1943_low_13 (Length: 251)
Name: NF1943_low_13
Description: NF1943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1943_low_13 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 37841351 - 37841588
Alignment:
| Q |
13 |
cagagacggcatcttttctacgtgagataatgaatgaacatgannnnnnnatagttgggagaagacatgaaactcaatctcctcaaacagatggattggc |
112 |
Q |
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| T |
37841351 |
cagaaacggcatcttttctacgtgagataatgaatgaacatgatttttttatagttgggagaagacatgaaactcaatctcctcaaacagatggattggc |
37841450 |
T |
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| Q |
113 |
agaatggagtgaatttccagaacttggagctattggtgattttcttgcttcacccgatcttaatagcagtgcatctgttttggtcgttcaacaacaactc |
212 |
Q |
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| T |
37841451 |
agaatggagtgaatttccagaacttggagctattggtgattttcttgcttcacccgatcttaatagtagtgcatctgttttggttgttcaacaacaactc |
37841550 |
T |
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| Q |
213 |
tcatgtccgaatgacctcaaagggtgggttttgtagtt |
250 |
Q |
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| T |
37841551 |
tcatgttcgaatgacctcaaagggtgggttttgtagtt |
37841588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 37845294 - 37845365
Alignment:
| Q |
180 |
agtgcatctgttttggtcgttcaacaacaactctcatgtccgaatgacctcaaagggtgggttttgtagttg |
251 |
Q |
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| T |
37845294 |
agtgcatttgttttggttgtgcaacaacaactctcacacacgaatgaccttaaagggtggattttgtagttg |
37845365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 38380900 - 38380670
Alignment:
| Q |
21 |
gcatcttttctacgtgagataatgaatgaacatgannnnnnnatagttgggagaagacatgaaactcaatctcctcaaacagatggattggcagaatgga |
120 |
Q |
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| T |
38380900 |
gcatcttttctacgtgagattgtgaacgaacatgatttctttatagttgggagaagacatgaaactcaatctcctcaaactgatggattagcagaatgga |
38380801 |
T |
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| Q |
121 |
gtgaatttccagaacttggagctattggtgattttcttgcttcacccgatcttaatagcagtgcatctgttttggtcgttcaacaacaactctcatgtcc |
220 |
Q |
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| T |
38380800 |
gtgaatttccagaacttggtgctattggtgattttcttgcttcacctgatcttaatagtagtgcatctgttttggttgtgcaacaacaactctcacgcac |
38380701 |
T |
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| Q |
221 |
gaatgacctcaaagggtgggttttgtagttg |
251 |
Q |
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| T |
38380700 |
gaatgaccttaaagggtggattttgtagttg |
38380670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 38389766 - 38389536
Alignment:
| Q |
21 |
gcatcttttctacgtgagataatgaatgaacatgannnnnnnatagttgggagaagacatgaaactcaatctcctcaaacagatggattggcagaatgga |
120 |
Q |
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| T |
38389766 |
gcatcttttctacgtgagattgtgaacgaacatgatttctttatagttgggagaagacatgaaactcaatatcctcaaaccgatggattagcagaatgga |
38389667 |
T |
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| Q |
121 |
gtgaatttccagaacttggagctattggtgattttcttgcttcacccgatcttaatagcagtgcatctgttttggtcgttcaacaacaactctcatgtcc |
220 |
Q |
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| T |
38389666 |
gtgaatttccagaacttggtgctattggtgattttcttgcttcacctgatcttaatagtaatgcatctgttttggttgtgcagcaacaactctcacgcgc |
38389567 |
T |
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| Q |
221 |
gaatgacctcaaagggtgggttttgtagttg |
251 |
Q |
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| T |
38389566 |
aaatgaccttaaaaggtggattttgtagttg |
38389536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 211
Target Start/End: Complemental strand, 38398529 - 38398339
Alignment:
| Q |
21 |
gcatcttttctacgtgagataatgaatgaacatgannnnnnnatagttgggagaagacatgaaactcaatctcctcaaacagatggattggcagaatgga |
120 |
Q |
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| T |
38398529 |
gcatcttttctacgtgagattgtgaacgaacatgatttctttatagttgggagaagacatgaaactcaatctcctcaaactgatggattagcagaatgga |
38398430 |
T |
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| Q |
121 |
gtgaatttccagaacttggagctattggtgattttcttgcttcacccgatcttaatagcagtgcatctgttttggtcgttcaacaacaact |
211 |
Q |
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| T |
38398429 |
gtgaatttccagaactcggtgctattggtgattttcttgtttcacctgatcttaatagtagtgcatctgttttggttgtgcaacaacaact |
38398339 |
T |
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