View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1943_low_3 (Length: 405)

Name: NF1943_low_3
Description: NF1943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1943_low_3
NF1943_low_3
[»] chr1 (10 HSPs)
chr1 (13-390)||(11639047-11639429)
chr1 (354-390)||(27145978-27146014)
chr1 (349-391)||(43338172-43338214)
chr1 (356-390)||(17631081-17631115)
chr1 (356-390)||(27145599-27145633)
chr1 (357-390)||(17628656-17628689)
chr1 (329-390)||(29723546-29723607)
chr1 (357-390)||(45327637-45327670)
chr1 (330-390)||(32515394-32515454)
chr1 (350-382)||(37175897-37175929)
[»] chr7 (11 HSPs)
chr7 (350-388)||(41040224-41040262)
chr7 (358-390)||(27626104-27626136)
chr7 (343-390)||(39566173-39566220)
chr7 (356-390)||(6857318-6857352)
chr7 (356-390)||(12834941-12834975)
chr7 (360-390)||(29574608-29574638)
chr7 (356-390)||(44989908-44989942)
chr7 (329-390)||(20553160-20553221)
chr7 (358-391)||(30134105-30134138)
chr7 (355-388)||(44686989-44687022)
chr7 (354-390)||(29290390-29290426)
[»] chr6 (8 HSPs)
chr6 (328-390)||(32976035-32976097)
chr6 (350-390)||(2455867-2455907)
chr6 (351-390)||(2767723-2767762)
chr6 (337-384)||(7931686-7931733)
chr6 (356-390)||(32917254-32917288)
chr6 (356-390)||(34939801-34939835)
chr6 (337-390)||(3775088-3775141)
chr6 (354-390)||(33385586-33385622)
[»] chr5 (14 HSPs)
chr5 (337-390)||(11457155-11457208)
chr5 (329-390)||(32172710-32172771)
chr5 (349-390)||(41957423-41957464)
chr5 (358-390)||(14364279-14364311)
chr5 (350-390)||(40499699-40499739)
chr5 (331-390)||(11700332-11700391)
chr5 (356-390)||(38047858-38047892)
chr5 (356-390)||(38338380-38338414)
chr5 (356-389)||(13604828-13604861)
chr5 (354-390)||(8177509-8177545)
chr5 (342-390)||(10152391-10152439)
chr5 (330-390)||(16380524-16380584)
chr5 (350-390)||(18700441-18700481)
chr5 (354-386)||(36774684-36774716)
[»] chr3 (9 HSPs)
chr3 (349-390)||(1217772-1217813)
chr3 (354-390)||(24624267-24624303)
chr3 (356-390)||(20192585-20192619)
chr3 (356-390)||(37273191-37273225)
chr3 (356-390)||(42817201-42817235)
chr3 (354-390)||(27290878-27290914)
chr3 (354-390)||(43115113-43115149)
chr3 (350-390)||(45541628-45541668)
chr3 (350-390)||(49772641-49772681)
[»] chr2 (9 HSPs)
chr2 (354-390)||(9878659-9878695)
chr2 (337-380)||(37297495-37297538)
chr2 (355-390)||(41851142-41851177)
chr2 (356-390)||(1494425-1494459)
chr2 (356-389)||(1830103-1830136)
chr2 (342-390)||(1741997-1742045)
chr2 (344-388)||(9595317-9595361)
chr2 (354-390)||(11063545-11063581)
chr2 (358-390)||(12215864-12215896)
[»] chr8 (6 HSPs)
chr8 (356-391)||(9540975-9541010)
chr8 (356-390)||(11569436-11569470)
chr8 (356-390)||(29168644-29168678)
chr8 (356-390)||(30987970-30988004)
chr8 (337-382)||(28468457-28468501)
chr8 (358-390)||(31875576-31875608)
[»] chr4 (7 HSPs)
chr4 (356-389)||(29375961-29375994)
chr4 (330-390)||(2996630-2996690)
chr4 (351-391)||(4243622-4243662)
chr4 (342-390)||(7730657-7730705)
chr4 (342-390)||(20656094-20656142)
chr4 (337-389)||(25896842-25896894)
chr4 (350-390)||(44119181-44119221)


Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 390
Target Start/End: Original strand, 11639047 - 11639429
Alignment:
Q  13 aatattcagtaatgatgatcaacgagggggttaatgatattaaatttgattacatgattttgtttttcttttcggtaggagatggatgaatgaaggtgaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11639047 aatattcagtaatgatgatcaacgagggggttaatgatattaaatttgattacatgattttgtttttcttttcggtaggagatggatgaatgaaagtgaa 11639146  T
Q  113 agacttgacatatcttgttttagannnnnnnnaactaaacaaattgtccagtttagatgcttttgctcttaatttatatagtttatgactaatgttactg 212  Q
    ||||||||||||||||||||||||        ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11639147 agacttgacatatcttgttttagattttttttaactaaacaaattgttcaatttagatgcttttgctcttaatttatatagtttatgactaatggtactg 11639246  T
Q  213 tnnnnnnnta-ttatgttcatacatgtaaccgtgataatgtccaatgtctttgacattagcagtatcaacgtgttgtgttcgatgtctgtgtcaggtcaa 311  Q
    |        | |||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  11639247 taaaaaaaaaattatgttcatacatgtaaccgtgataatgtcctatgtttttgacattagcagtgtcaacgtgttgtgttcgatgtctgtatcaggtcaa 11639346  T
Q  312 agtccatgcttc----ataaggcataagaacttttgagacaatttagaagagcttatggaaacagcttatgacatgtccataa 390  Q
    ||||||||||||    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11639347 agtccatgcttcataaataaggcataagaacttttgagacaatttagaagagcttatgaaaacagcttatgacatgtccataa 11639429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 27146014 - 27145978
Alignment:
Q  354 gaagagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||||||||||||||||||||||||||||||||||    
T  27146014 gaagagcttatggaaacagcttatgacatgtccataa 27145978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 43338214 - 43338172
Alignment:
Q  349 atttagaagagcttatggaaacagcttatgacatgtccataat 391  Q
    |||||||||| ||||||||||||||||||||||||| ||||||    
T  43338214 atttagaagaacttatggaaacagcttatgacatgttcataat 43338172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 17631081 - 17631115
Alignment:
Q  356 agagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||||||||||||| ||||||||||||||||||    
T  17631081 agagcttatggaaacaacttatgacatgtccataa 17631115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 27145633 - 27145599
Alignment:
Q  356 agagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||||||||||| ||||||||||||||||||||    
T  27145633 agagcttatggaaaaagcttatgacatgtccataa 27145599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 390
Target Start/End: Complemental strand, 17628689 - 17628656
Alignment:
Q  357 gagcttatggaaacagcttatgacatgtccataa 390  Q
    ||||||||||||||| ||||||||||||||||||    
T  17628689 gagcttatggaaacaacttatgacatgtccataa 17628656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 390
Target Start/End: Complemental strand, 29723607 - 29723546
Alignment:
Q  329 gcataagaacttttgagacaatttagaagagcttatggaaacagcttatgacatgtccataa 390  Q
    ||||||| |||| ||| ||| |||  |||| || ||||||||||||||||||||||||||||    
T  29723607 gcataagcacttgtgatacagtttgaaagaactaatggaaacagcttatgacatgtccataa 29723546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 390
Target Start/End: Complemental strand, 45327670 - 45327637
Alignment:
Q  357 gagcttatggaaacagcttatgacatgtccataa 390  Q
    ||||||||||||||| ||||||||||||||||||    
T  45327670 gagcttatggaaacaacttatgacatgtccataa 45327637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 390
Target Start/End: Original strand, 32515394 - 32515454
Alignment:
Q  330 cataagaacttttgagacaatttagaagagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||| |||| ||||||  ||| | |||||||||||||||||| ||||||||||| ||||    
T  32515394 cataagcacttgtgagactgtttgggagagcttatggaaacagcgtatgacatgtcaataa 32515454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 382
Target Start/End: Original strand, 37175897 - 37175929
Alignment:
Q  350 tttagaagagcttatggaaacagcttatgacat 382  Q
    |||||||||||||||||||||| ||||||||||    
T  37175897 tttagaagagcttatggaaacaacttatgacat 37175929  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 41040262 - 41040224
Alignment:
Q  350 tttagaagagcttatggaaacagcttatgacatgtccat 388  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  41040262 tttagaagagcttatggaaacagcttatgacatatccat 41040224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 390
Target Start/End: Original strand, 27626104 - 27626136
Alignment:
Q  358 agcttatggaaacagcttatgacatgtccataa 390  Q
    |||||||||||||||||||||||||||||||||    
T  27626104 agcttatggaaacagcttatgacatgtccataa 27626136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 390
Target Start/End: Original strand, 39566173 - 39566220
Alignment:
Q  343 gagacaatttagaagagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||| ||||||||||||||||||||||  |||| ||||||||||||    
T  39566173 gagacagtttagaagagcttatggaaacattttatcacatgtccataa 39566220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 6857318 - 6857352
Alignment:
Q  356 agagcttatggaaacagcttatgacatgtccataa 390  Q
    ||||||||||||||||||||||| |||||||||||    
T  6857318 agagcttatggaaacagcttatgccatgtccataa 6857352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 12834941 - 12834975
Alignment:
Q  356 agagcttatggaaacagcttatgacatgtccataa 390  Q
    |||| ||||||||||||||||||||||||||||||    
T  12834941 agagattatggaaacagcttatgacatgtccataa 12834975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 390
Target Start/End: Original strand, 29574608 - 29574638
Alignment:
Q  360 cttatggaaacagcttatgacatgtccataa 390  Q
    |||||||||||||||||||||||||||||||    
T  29574608 cttatggaaacagcttatgacatgtccataa 29574638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 44989908 - 44989942
Alignment:
Q  356 agagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||||||||||| ||||||||||||||||||||    
T  44989908 agagcttatggaaatagcttatgacatgtccataa 44989942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 390
Target Start/End: Complemental strand, 20553221 - 20553160
Alignment:
Q  329 gcataagaacttttgagacaatttagaagagcttatggaaacagcttatgacatgtccataa 390  Q
    ||||||| |||| ||||||  || || ||||||||||||||||||||| ||||||| |||||    
T  20553221 gcataagcacttgtgagactgttcaggagagcttatggaaacagcttacgacatgttcataa 20553160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 391
Target Start/End: Complemental strand, 30134138 - 30134105
Alignment:
Q  358 agcttatggaaacagcttatgacatgtccataat 391  Q
    |||||||||||||||||||||||||||| |||||    
T  30134138 agcttatggaaacagcttatgacatgtctataat 30134105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 388
Target Start/End: Complemental strand, 44687022 - 44686989
Alignment:
Q  355 aagagcttatggaaacagcttatgacatgtccat 388  Q
    ||||||||||||||||| ||||||||||||||||    
T  44687022 aagagcttatggaaacaacttatgacatgtccat 44686989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 29290426 - 29290390
Alignment:
Q  354 gaagagcttatggaaacagcttatgacatgtccataa 390  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  29290426 gaagatcttatggaaacaacttatgacatgtccataa 29290390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 328 - 390
Target Start/End: Complemental strand, 32976097 - 32976035
Alignment:
Q  328 ggcataagaacttttgagacaatttagaagagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||||| |||| ||||||  ||| ||||||||||| ||||||||||||||||| |||||||    
T  32976097 ggcataagtacttgtgagactgtttggaagagcttatagaaacagcttatgacatttccataa 32976035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 2455907 - 2455867
Alignment:
Q  350 tttagaagagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||||||||||||||||||| ||||||||||| ||||||    
T  2455907 tttagaagagcttatggaaacaacttatgacatgcccataa 2455867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 390
Target Start/End: Original strand, 2767723 - 2767762
Alignment:
Q  351 ttagaagagcttatggaaacagcttatgacatgtccataa 390  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  2767723 ttaggagagcttgtggaaacagcttatgacatgtccataa 2767762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 384
Target Start/End: Original strand, 7931686 - 7931733
Alignment:
Q  337 acttttgagacaatttagaagagcttatggaaacagcttatgacatgt 384  Q
    |||| |||||| ||||||||||||||||| ||||| ||||||||||||    
T  7931686 acttgtgagaccatttagaagagcttatgaaaacaacttatgacatgt 7931733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 32917288 - 32917254
Alignment:
Q  356 agagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||||||||||||| ||||||||||||||||||    
T  32917288 agagcttatggaaacaacttatgacatgtccataa 32917254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 34939835 - 34939801
Alignment:
Q  356 agagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||||| ||||||||||||||||||||||||||    
T  34939835 agagcttacggaaacagcttatgacatgtccataa 34939801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 3775088 - 3775141
Alignment:
Q  337 acttttgagacaatttagaagagcttatggaaacagcttatgacatgtccataa 390  Q
    |||| |||||| |||  ||||||||||| ||||||||||||||||||| |||||    
T  3775088 acttgtgagactattcggaagagcttatagaaacagcttatgacatgtgcataa 3775141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 33385622 - 33385586
Alignment:
Q  354 gaagagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||| |||||||||||||| |||||||||||||||    
T  33385622 gaagagtttatggaaacagctcatgacatgtccataa 33385586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 390
Target Start/End: Complemental strand, 11457208 - 11457155
Alignment:
Q  337 acttttgagacaatttagaagagcttatggaaacagcttatgacatgtccataa 390  Q
    |||| ||||||  ||| |||||||||||||||||| ||||||||||||||||||    
T  11457208 acttgtgagactgttttgaagagcttatggaaacaacttatgacatgtccataa 11457155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 390
Target Start/End: Complemental strand, 32172771 - 32172710
Alignment:
Q  329 gcataagaacttttgagacaatttagaagagcttatggaaacagcttatgacatgtccataa 390  Q
    ||||||| |||| ||||| | ||| | |||||||||||||||| ||||||||||||||||||    
T  32172771 gcataagcacttgtgagatagtttgggagagcttatggaaacaacttatgacatgtccataa 32172710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 390
Target Start/End: Original strand, 41957423 - 41957464
Alignment:
Q  349 atttagaagagcttatggaaacagcttatgacatgtccataa 390  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  41957423 atttggaagagcttacggaaacagcttatgacatgtccataa 41957464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 390
Target Start/End: Complemental strand, 14364311 - 14364279
Alignment:
Q  358 agcttatggaaacagcttatgacatgtccataa 390  Q
    |||||||||||||||||||||||||||||||||    
T  14364311 agcttatggaaacagcttatgacatgtccataa 14364279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 390
Target Start/End: Original strand, 40499699 - 40499739
Alignment:
Q  350 tttagaagagcttatggaaacagcttatgacatgtccataa 390  Q
    ||||| |||||||||||||||| ||||||||||||||||||    
T  40499699 tttaggagagcttatggaaacaacttatgacatgtccataa 40499739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 390
Target Start/End: Original strand, 11700332 - 11700391
Alignment:
Q  331 ataagaacttttgagacaatttagaagagcttatggaaacagcttatgacatgtccataa 390  Q
    ||||| |||| |||||| ||| || |||| ||||||||||| ||||||||||||||||||    
T  11700332 ataagcacttgtgagactattgaggagagtttatggaaacaacttatgacatgtccataa 11700391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 38047858 - 38047892
Alignment:
Q  356 agagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||||||||||||| ||||||||||||||||||    
T  38047858 agagcttatggaaacaacttatgacatgtccataa 38047892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 38338414 - 38338380
Alignment:
Q  356 agagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||||| ||||||||||||||||||||||||||    
T  38338414 agagcttacggaaacagcttatgacatgtccataa 38338380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 389
Target Start/End: Original strand, 13604828 - 13604861
Alignment:
Q  356 agagcttatggaaacagcttatgacatgtccata 389  Q
    |||||||||| |||||||||||||||||||||||    
T  13604828 agagcttatgaaaacagcttatgacatgtccata 13604861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 390
Target Start/End: Original strand, 8177509 - 8177545
Alignment:
Q  354 gaagagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  8177509 gaagagctcatggaaacagcttatgatatgtccataa 8177545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 10152439 - 10152391
Alignment:
Q  342 tgagacaatttagaagagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||| |||| | |||||||||| ||||| ||||||||||||||||||    
T  10152439 tgagactattttggagagcttatgaaaacaacttatgacatgtccataa 10152391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 390
Target Start/End: Original strand, 16380524 - 16380584
Alignment:
Q  330 cataagaacttttgagacaatttagaagagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||| |||| ||| || ||||  ||||| |||||||||||||||| |||||||||||||    
T  16380524 cataagtacttgtgaaactatttgcaagagtttatggaaacagcttacgacatgtccataa 16380584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 18700481 - 18700441
Alignment:
Q  350 tttagaagagcttatggaaacagcttatgacatgtccataa 390  Q
    |||| ||||||||||||||||| ||||||||||||| ||||    
T  18700481 tttaaaagagcttatggaaacaacttatgacatgtctataa 18700441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 386
Target Start/End: Original strand, 36774684 - 36774716
Alignment:
Q  354 gaagagcttatggaaacagcttatgacatgtcc 386  Q
    ||||||||||||||||| |||||||||||||||    
T  36774684 gaagagcttatggaaacggcttatgacatgtcc 36774716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 390
Target Start/End: Original strand, 1217772 - 1217813
Alignment:
Q  349 atttagaagagcttatggaaacagcttatgacatgtccataa 390  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  1217772 atttggaagagcttacggaaacagcttatgacatgtccataa 1217813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 24624303 - 24624267
Alignment:
Q  354 gaagagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||||||||| ||||||||||||||||||||||||    
T  24624303 gaagagcttatgaaaacagcttatgacatgtccataa 24624267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 20192585 - 20192619
Alignment:
Q  356 agagcttatggaaacagcttatgacatgtccataa 390  Q
    ||||||||| |||||||||||||||||||||||||    
T  20192585 agagcttatagaaacagcttatgacatgtccataa 20192619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 37273225 - 37273191
Alignment:
Q  356 agagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||||||||||||| ||||||||||||||||||    
T  37273225 agagcttatggaaacaacttatgacatgtccataa 37273191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 42817201 - 42817235
Alignment:
Q  356 agagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||||||||||||||| ||||||||||||||||    
T  42817201 agagcttatggaaacagcatatgacatgtccataa 42817235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 390
Target Start/End: Original strand, 27290878 - 27290914
Alignment:
Q  354 gaagagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  27290878 gaagagcttatgaaaacagcttatgacatgcccataa 27290914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 43115149 - 43115113
Alignment:
Q  354 gaagagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  43115149 gaagagtttatggaaacaacttatgacatgtccataa 43115113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 45541668 - 45541628
Alignment:
Q  350 tttagaagagcttatggaaacagcttatgacatgtccataa 390  Q
    ||||||||| |||||| |||||||||||||||||| |||||    
T  45541668 tttagaagaacttatgaaaacagcttatgacatgttcataa 45541628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 390
Target Start/End: Original strand, 49772641 - 49772681
Alignment:
Q  350 tttagaagagcttatggaaacagcttatgacatgtccataa 390  Q
    ||||| |||||||||||||||| ||||||| ||||||||||    
T  49772641 tttaggagagcttatggaaacaacttatgagatgtccataa 49772681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 390
Target Start/End: Original strand, 9878659 - 9878695
Alignment:
Q  354 gaagagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||||||||||||||| ||||||||||||||||||    
T  9878659 gaagagcttatggaaacaacttatgacatgtccataa 9878695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 380
Target Start/End: Original strand, 37297495 - 37297538
Alignment:
Q  337 acttttgagacaatttagaagagcttatggaaacagcttatgac 380  Q
    |||| |||||| |||| |||||||||||||||||||||||||||    
T  37297495 acttgtgagaccatttggaagagcttatggaaacagcttatgac 37297538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 390
Target Start/End: Original strand, 41851142 - 41851177
Alignment:
Q  355 aagagcttatggaaacagcttatgacatgtccataa 390  Q
    ||||||||| ||||||||||||||||||||||||||    
T  41851142 aagagcttacggaaacagcttatgacatgtccataa 41851177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 1494425 - 1494459
Alignment:
Q  356 agagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||||||| ||||||||||||||||||||||||    
T  1494425 agagcttatgaaaacagcttatgacatgtccataa 1494459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 389
Target Start/End: Complemental strand, 1830136 - 1830103
Alignment:
Q  356 agagcttatggaaacagcttatgacatgtccata 389  Q
    |||||||||||||||| |||||||||||||||||    
T  1830136 agagcttatggaaacatcttatgacatgtccata 1830103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 1741997 - 1742045
Alignment:
Q  342 tgagacaatttagaagagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||| |||| | |||||||||||||||| |||||||||||| |||||    
T  1741997 tgagactatttgggagagcttatggaaacaacttatgacatgtgcataa 1742045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 388
Target Start/End: Complemental strand, 9595361 - 9595317
Alignment:
Q  344 agacaatttagaagagcttatggaaacagcttatgacatgtccat 388  Q
    |||| ||||||||||| ||||| ||||| ||||||||||||||||    
T  9595361 agaccatttagaagagtttatgaaaacatcttatgacatgtccat 9595317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 11063581 - 11063545
Alignment:
Q  354 gaagagcttatggaaacagcttatgacatgtccataa 390  Q
    ||||||||||||||||||  |||||||||||||||||    
T  11063581 gaagagcttatggaaacatattatgacatgtccataa 11063545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 390
Target Start/End: Complemental strand, 12215896 - 12215864
Alignment:
Q  358 agcttatggaaacagcttatgacatgtccataa 390  Q
    |||||||||||| ||||||||||||||||||||    
T  12215896 agcttatggaaatagcttatgacatgtccataa 12215864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 391
Target Start/End: Original strand, 9540975 - 9541010
Alignment:
Q  356 agagcttatggaaacagcttatgacatgtccataat 391  Q
    |||||||||||||||| |||||||||||||||||||    
T  9540975 agagcttatggaaacatcttatgacatgtccataat 9541010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 11569436 - 11569470
Alignment:
Q  356 agagcttatggaaacagcttatgacatgtccataa 390  Q
    ||||||||||||||||||||||||||||| |||||    
T  11569436 agagcttatggaaacagcttatgacatgtacataa 11569470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 29168644 - 29168678
Alignment:
Q  356 agagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||||||| ||||||||||||||||||||||||    
T  29168644 agagcttatgaaaacagcttatgacatgtccataa 29168678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 30987970 - 30988004
Alignment:
Q  356 agagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||||||||||||| ||||||||||||||||||    
T  30987970 agagcttatggaaacaacttatgacatgtccataa 30988004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 28468501 - 28468457
Alignment:
Q  337 acttttgagacaatttagaagagcttatggaaacagcttatgacat 382  Q
    ||||||||||| ||||||| ||| ||||||||||||||||||||||    
T  28468501 acttttgagactatttaga-gagattatggaaacagcttatgacat 28468457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 390
Target Start/End: Original strand, 31875576 - 31875608
Alignment:
Q  358 agcttatggaaacagcttatgacatgtccataa 390  Q
    |||||||||||||| ||||||||||||||||||    
T  31875576 agcttatggaaacaacttatgacatgtccataa 31875608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 389
Target Start/End: Complemental strand, 29375994 - 29375961
Alignment:
Q  356 agagcttatggaaacagcttatgacatgtccata 389  Q
    |||||||||||||||||||||||||| |||||||    
T  29375994 agagcttatggaaacagcttatgacaggtccata 29375961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 390
Target Start/End: Complemental strand, 2996690 - 2996630
Alignment:
Q  330 cataagaacttttgagacaatttagaagagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||| |||||||||||  |||   |||||||||| ||||| ||||||||||||||||||    
T  2996690 cataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtccataa 2996630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 4243662 - 4243622
Alignment:
Q  351 ttagaagagcttatggaaacagcttatgacatgtccataat 391  Q
    ||||| || |||||||||||| |||||||||||||||||||    
T  4243662 ttagaggaacttatggaaacaacttatgacatgtccataat 4243622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 7730705 - 7730657
Alignment:
Q  342 tgagacaatttagaagagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||| |||| | |||||||| ||||||| ||||||||||||||||||    
T  7730705 tgagactattttggagagcttaaggaaacaacttatgacatgtccataa 7730657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 20656142 - 20656094
Alignment:
Q  342 tgagacaatttagaagagcttatggaaacagcttatgacatgtccataa 390  Q
    |||||| |||||| ||||||| ||| |||| ||||||||||||||||||    
T  20656142 tgagactatttagtagagcttctggcaacaacttatgacatgtccataa 20656094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 389
Target Start/End: Complemental strand, 25896894 - 25896842
Alignment:
Q  337 acttttgagacaatttagaagagcttatggaaacagcttatgacatgtccata 389  Q
    |||| ||||||  ||||| ||||||||| |||| |||||||||||||||||||    
T  25896894 acttgtgagactgtttaggagagcttatagaaatagcttatgacatgtccata 25896842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 390
Target Start/End: Original strand, 44119181 - 44119221
Alignment:
Q  350 tttagaagagcttatggaaacagcttatgacatgtccataa 390  Q
    ||||||||||||||| ||||||  |||||||||||||||||    
T  44119181 tttagaagagcttatagaaacaatttatgacatgtccataa 44119221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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