View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1943_low_7 (Length: 349)
Name: NF1943_low_7
Description: NF1943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1943_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 49994357 - 49994099
Alignment:
| Q |
1 |
atagcaaaaccaaaattcagaacgagatatataaatcaagttctgataacaaataacaaaaattaagcagaaaaatcacgcgtttgaatctatttaagca |
100 |
Q |
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| T |
49994357 |
atagcaaaaccaaaattcagaacgagatatataaatcaagttctgataacaaataacaaaaattaagcagaaaaatcacgcgtttgaatctatttaagca |
49994258 |
T |
|
| Q |
101 |
cgtttatgagatgagaaacgtgcatggacgaaaaaattgtaacagctcaaggttaagatctggtcaaatttgaacataagcaaaataaataaattataaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49994257 |
cgtttatgagatgagaaacgtgcatggacgaaaaaattgtaacagctcaaggttaagatctggtcaaatttgaacataagcaaaat----aaattataaa |
49994162 |
T |
|
| Q |
201 |
caagttttataaattttcttaaccgcttagctctaatcaccttaattattattgttttttggt |
263 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49994161 |
cacgttttataaattttcttaaccgcttagctctaatcaccttaattattattgttttttggt |
49994099 |
T |
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