View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1943_low_9 (Length: 316)
Name: NF1943_low_9
Description: NF1943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1943_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 7e-83; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 137 - 300
Target Start/End: Complemental strand, 9998904 - 9998741
Alignment:
| Q |
137 |
ctctgagctgatcgactaacctggctcccgagctgatcggcaaggctgtaatcagccaatggattttcaaataggcccataacaaactttactctcaaaa |
236 |
Q |
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| T |
9998904 |
ctctgagctgatcgactaacctggctcccgagctgatcggcaaggctgtaatcagccaatggattttcaaataggcccataacaaacttgactctcaaaa |
9998805 |
T |
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| Q |
237 |
ttctcttcactgcatcatcaattctactcataggtatgacattctttttcactagtaaagttag |
300 |
Q |
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| T |
9998804 |
ttctcttcactgcatcatcaattctactcataggtatgacattctttttcactagtaaggttag |
9998741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 147 - 300
Target Start/End: Complemental strand, 10004590 - 10004437
Alignment:
| Q |
147 |
atcgactaacctggctcccgagctgatcggcaaggctgtaatcagccaatggattttcaaataggcccataacaaactttactctcaaaattctcttcac |
246 |
Q |
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| T |
10004590 |
atcgactaaccgggctaccgatttgatcggcaaggctgtaatcagccaatggattttcaaataggcccataacaaacttcactctcaaaattctcttcac |
10004491 |
T |
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| Q |
247 |
tgcatcatcaattctactcataggtatgacattctttttcactagtaaagttag |
300 |
Q |
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| T |
10004490 |
tgcatcatcaattctactcataggtatgacattctttttcactagtaaggttag |
10004437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 135 - 301
Target Start/End: Complemental strand, 10013145 - 10012979
Alignment:
| Q |
135 |
aactctgagctgatcgactaacctggctcccgagctgatcggcaaggctgtaatcagccaatggattttcaaataggcccataacaaactttactctcaa |
234 |
Q |
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| T |
10013145 |
aactctgagttgatcgactaaccgggctcccgatttgatcggcaaggctgtaatcagctaatggattttcaaataggcccataacaaacttgactctcaa |
10013046 |
T |
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| Q |
235 |
aattctcttcactgcatcatcaattctactcataggtatgacattctttttcactagtaaagttagt |
301 |
Q |
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| T |
10013045 |
aattctctttactgcatcatcaattctactcattggtatggcattctttttcactagtgaggttagt |
10012979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 142 - 297
Target Start/End: Complemental strand, 9991744 - 9991589
Alignment:
| Q |
142 |
agctgatcgactaacctggctcccgagctgatcggcaaggctgtaatcagccaatggattttcaaataggcccataacaaactttactctcaaaattctc |
241 |
Q |
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|||| |||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
9991744 |
agctcatcgactaacctggctcccgagttgatcggtaaggctgtaatctgccaatggattttcaaatagtcccataacaaacttgactctcaaaattctc |
9991645 |
T |
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| Q |
242 |
ttcactgcatcatcaattctactcataggtatgacattctttttcactagtaaagt |
297 |
Q |
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| T |
9991644 |
ttcactgcatcatcaattctactcataggtatggcattgcttttcactagtaaagt |
9991589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 9998951 - 9998906
Alignment:
| Q |
16 |
caaacattttgaacgatcttacgattactattgattgacagtgtaa |
61 |
Q |
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| T |
9998951 |
caaacattttaaacgatcttacgattactattgattgacagtgtaa |
9998906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 33433808 - 33433750
Alignment:
| Q |
38 |
gattactattgattgacagtgtaaaaatctttacacttacagtgtatacaaataaaatc |
96 |
Q |
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|||||| ||||||||| |||||||||||||||||| | | |||||||| |||| ||||| |
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| T |
33433808 |
gattacgattgattgagagtgtaaaaatctttacattgagagtgtataaaaatgaaatc |
33433750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 10386999 - 10386942
Alignment:
| Q |
45 |
attgattgacagtgtaaaaatctttacacttacagtgtatacaaataaaatccaaatt |
102 |
Q |
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||||||||||| ||||||| |||||||||| | ||| |||| |||| ||||||||||| |
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| T |
10386999 |
attgattgacattgtaaaattctttacactaaaagtatatataaatcaaatccaaatt |
10386942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 16230809 - 16230865
Alignment:
| Q |
15 |
tcaaacattttgaacgatcttacgattactattgattgacagtgtaaaaatctttac |
71 |
Q |
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| T |
16230809 |
tcaaacattttaaatgatcagtcgattacgatcgattgacagtgtaaaaatctttac |
16230865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 36501946 - 36501906
Alignment:
| Q |
45 |
attgattgacagtgtaaaaatctttacacttacagtgtata |
85 |
Q |
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|||| |||||||||||||||| |||||||| |||||||||| |
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| T |
36501946 |
attggttgacagtgtaaaaatatttacactgacagtgtata |
36501906 |
T |
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