View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19440_high_6 (Length: 347)
Name: NF19440_high_6
Description: NF19440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19440_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 4442173 - 4442492
Alignment:
| Q |
13 |
aatattcttatcatcaaataattcagtgggaagaacttggttagaattttattctttgttcacataatacaacacagattgttgaaagtaatagagacag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4442173 |
aatattcttatcatcaaataattcagtgggaagaacttggttagaattttattcttcgttcacataatacaacacagattgttgaaagtaatagagacaa |
4442272 |
T |
|
| Q |
113 |
cccagccattttgccaagattatcatgttgcattggaactagagagctacggttgatgttaattttagcagtatttattgagtttatgagtaattaactg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4442273 |
cccagccattttgccaagattatcatgttgcattggaactagagagctacggttgatgttaattttagcagtatttattgagtttatgagtaattaactg |
4442372 |
T |
|
| Q |
213 |
gaccactgttcataacgtggtctgtcatgtatttctattttaatataaactctattatgaggaatgaaacctaaaaagaaaaataggcctctgtggcctc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4442373 |
gaccactgttcataacgtggtctgtcatgtatttctattttaatataaactctattatgagaaatgaaacctaaaaagaaaaataggcctctgtggcctc |
4442472 |
T |
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| Q |
313 |
taatgaaaaagagttctttg |
332 |
Q |
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|||||||||||||||||||| |
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| T |
4442473 |
taatgaaaaagagttctttg |
4442492 |
T |
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