View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19440_low_1 (Length: 824)
Name: NF19440_low_1
Description: NF19440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19440_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 461 - 801
Target Start/End: Complemental strand, 10034087 - 10033746
Alignment:
| Q |
461 |
agtgatattcctcaccttacaagattgttttgtaaat--gcattagcctattaattttcaatttcaattcaatcaaatgcgacattactttttcacatta |
558 |
Q |
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| T |
10034087 |
agtgatattcctcatcttacaagatggttttgtaaatatgagttagcctattaattttcaatttcaattcaatcaaatgtgatattccttttgcacatta |
10033988 |
T |
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| Q |
559 |
agatggtagagtcaacccatataaaatcataaaaatcacctggaattcatgacggaaaatcctttaacattggcaacttcaatgagcgcttttctataac |
658 |
Q |
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| T |
10033987 |
agatggtagagtcaaccagtataaaatcataaaaatcacctggaactcatgacggaaaatcctttaacatcggcagcttcaatgagcgcttttctataac |
10033888 |
T |
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| Q |
659 |
ggattaacacgtcttttgtcaagatgcttcatgcaataagatctttaaaagcctctccaaacattcctttctgatagcgtacataggaagggtcaacatt |
758 |
Q |
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| T |
10033887 |
agattgactcgtctttcgtcaagatgcttcgtgcaataagatcttcaaaagcctctccaaacattcctttccgatagcgtacataggaaggatcaacatt |
10033788 |
T |
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| Q |
759 |
atagaacacatgcacaaaacctctgctctatggctttacgaca |
801 |
Q |
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| T |
10033787 |
atagaacaaaggcac-aaacctttgctctatggttttacgaca |
10033746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 776
Target Start/End: Original strand, 7891339 - 7891488
Alignment:
| Q |
627 |
attggcaacttcaatgagcgcttttctataacggattaacacgtcttttgtcaagatgcttcatgcaataagatctttaaaagcctctccaaacattcct |
726 |
Q |
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| T |
7891339 |
attggcagcttcaaagagcgcgtctctataacgtattgagctgtcttctgtcaagatgcctcgtgcaatacaatctacaaaagcttctccaaacaccccc |
7891438 |
T |
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| Q |
727 |
ttctgatagcgtacataggaagggtcaacattatagaacacatgcacaaa |
776 |
Q |
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| T |
7891439 |
ttctgttttagtacatcggagggatcaacatcatagaacacaggcacaaa |
7891488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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