View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19440_low_10 (Length: 330)
Name: NF19440_low_10
Description: NF19440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19440_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 191 - 324
Target Start/End: Original strand, 42409095 - 42409228
Alignment:
| Q |
191 |
catgatgcagttgttgctgatgtggctaccgagactgcaaagtacttgtttccgaaaagatttgaaagccgcactctcgaagaagctttgatgacaggtg |
290 |
Q |
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| T |
42409095 |
catgatgcagttgttgctgatgtggctaccgagactgcaaagtacttgtttccgaaaagatttgaaagccgcactctcgaagaagctttgatgacaggtg |
42409194 |
T |
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| Q |
291 |
cttcattttccttctcaattatgaaacaaatttt |
324 |
Q |
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| T |
42409195 |
cttcattttccttctcaattatgcaacaaatttt |
42409228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 42408905 - 42409029
Alignment:
| Q |
1 |
aactctgcatcttccaacaatagagtaagcacccaacgaagaaccatatcagcatttgaagctcgaatctcactcattttcgctctcgcttctcaatccg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42408905 |
aactctgcatcttccaacaatagagtaagcacccaacgaagaaccatatcagcatttgaagctcgaatctcactcattttcgctctcgcttctcaatcct |
42409004 |
T |
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| Q |
101 |
cctctctatcccagcgacgtaaatg |
125 |
Q |
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| T |
42409005 |
tctctctatcccagcgacgtaaatg |
42409029 |
T |
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