View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19440_low_12 (Length: 265)

Name: NF19440_low_12
Description: NF19440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19440_low_12
NF19440_low_12
[»] chr1 (3 HSPs)
chr1 (13-261)||(44179835-44180076)
chr1 (43-261)||(44206966-44207183)
chr1 (134-261)||(41556272-41556399)
[»] chr5 (7 HSPs)
chr5 (130-261)||(11497009-11497140)
chr5 (130-261)||(11504336-11504467)
chr5 (130-261)||(11511730-11511861)
chr5 (130-261)||(11519106-11519237)
chr5 (130-261)||(11526511-11526642)
chr5 (130-261)||(11533921-11534052)
chr5 (130-261)||(11541338-11541469)
[»] chr4 (1 HSPs)
chr4 (68-261)||(4860316-4860508)
[»] scaffold1005 (1 HSPs)
scaffold1005 (130-261)||(2481-2612)
[»] chr6 (1 HSPs)
chr6 (151-264)||(14927160-14927273)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 7e-92; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 13 - 261
Target Start/End: Complemental strand, 44180076 - 44179835
Alignment:
Q  13 aatatgaagaccaacttagtgagaatcatcaatcatctatctagtttacacaggcaatcaatgacataatcaccacaaaaaccataatgaaataaacaat 112  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44180076 aatatgaagaccaacttagtgagaatcatc-------tatctagtttacacaggcaatcaatgacataatcaccacaaaaaccataatgaaataaacaat 44179984  T
Q  113 gaagtagcatctgacctgattttcttgagtctctcaagatcatccctcagcttcatgtcaagttgattggatacaacttgagagaattttccatccttgt 212  Q
    |||||| || |||||| ||| |||||||||||||| | |||||| |||| ||||||||| ||||||||||| ||||| ||||||||||| ||||||||||    
T  44179983 gaagtaacaactgaccggatcttcttgagtctctccaaatcatctctcaacttcatgtcgagttgattggagacaacctgagagaatttcccatccttgt 44179884  T
Q  213 aatccttctttctgttcaaaaaccaatctggaaccttgaattgacgagg 261  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44179883 aatccttctttctgttcaaaaaccaatctggaaccttaaattgacgagg 44179835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 43 - 261
Target Start/End: Complemental strand, 44207183 - 44206966
Alignment:
Q  43 aatcatctatctagtttacacaggcaatcaatgacataatcaccacaaaaaccataatgaaataaacaatgaagtagcatctgacctgattttcttgagt 142  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||| |||||||||    
T  44207183 aatcatctatc-agtttacacaggcaatcaatgacataatcaccacaaaaaccataatgaaataaacaatgaagtaacaactgaccggatcttcttgagt 44207085  T
Q  143 ctctcaagatcatccctcagcttcatgtcaagttgattggatacaacttgagagaattttccatccttgtaatccttctttctgttcaaaaaccaatctg 242  Q
    ||||| | |||||| |||| ||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44207084 ctctccaaatcatctctcaacttcatgtcgagttgattggagacaacctgagagaatttcccatccttgtaatccttctttctgttcaaaaaccaatctg 44206985  T
Q  243 gaaccttgaattgacgagg 261  Q
    ||||||| |||||||||||    
T  44206984 gaaccttaaattgacgagg 44206966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 134 - 261
Target Start/End: Complemental strand, 41556399 - 41556272
Alignment:
Q  134 ttcttgagtctctcaagatcatccctcagcttcatgtcaagttgattggatacaacttgagagaattttccatccttgtaatccttctttctgttcaaaa 233  Q
    |||| ||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41556399 ttctcgagtctctccaaatcatccctcagcttcatgtcaaattgattggatacaacttgagagaatttcccatccttgtaatccttctttctgttcaaaa 41556300  T
Q  234 accaatctggaaccttgaattgacgagg 261  Q
    ||||||||||||||||||||||||||||    
T  41556299 accaatctggaaccttgaattgacgagg 41556272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 130 - 261
Target Start/End: Complemental strand, 11497140 - 11497009
Alignment:
Q  130 gattttcttgagtctctcaagatcatccctcagcttcatgtcaagttgattggatacaacttgagagaattttccatccttgtaatccttctttctgttc 229  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  11497140 gattttcttgagtctctcaggatcatccctcagcttcatgtcaagttgattggatacaagttgagagaatttgccatccttgtaatctttctttctgttc 11497041  T
Q  230 aaaaaccaatctggaaccttgaattgacgagg 261  Q
    ||||||||||||||||||||||||||||||||    
T  11497040 aaaaaccaatctggaaccttgaattgacgagg 11497009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 130 - 261
Target Start/End: Complemental strand, 11504467 - 11504336
Alignment:
Q  130 gattttcttgagtctctcaagatcatccctcagcttcatgtcaagttgattggatacaacttgagagaattttccatccttgtaatccttctttctgttc 229  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  11504467 gattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttc 11504368  T
Q  230 aaaaaccaatctggaaccttgaattgacgagg 261  Q
    |||||||||| |||||||||||||||||||||    
T  11504367 aaaaaccaatatggaaccttgaattgacgagg 11504336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 130 - 261
Target Start/End: Complemental strand, 11511861 - 11511730
Alignment:
Q  130 gattttcttgagtctctcaagatcatccctcagcttcatgtcaagttgattggatacaacttgagagaattttccatccttgtaatccttctttctgttc 229  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  11511861 gattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttc 11511762  T
Q  230 aaaaaccaatctggaaccttgaattgacgagg 261  Q
    |||||||||| |||||||||||||||||||||    
T  11511761 aaaaaccaatatggaaccttgaattgacgagg 11511730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 130 - 261
Target Start/End: Complemental strand, 11519237 - 11519106
Alignment:
Q  130 gattttcttgagtctctcaagatcatccctcagcttcatgtcaagttgattggatacaacttgagagaattttccatccttgtaatccttctttctgttc 229  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  11519237 gattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttc 11519138  T
Q  230 aaaaaccaatctggaaccttgaattgacgagg 261  Q
    |||||||||| |||||||||||||||||||||    
T  11519137 aaaaaccaatatggaaccttgaattgacgagg 11519106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 130 - 261
Target Start/End: Complemental strand, 11526642 - 11526511
Alignment:
Q  130 gattttcttgagtctctcaagatcatccctcagcttcatgtcaagttgattggatacaacttgagagaattttccatccttgtaatccttctttctgttc 229  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  11526642 gattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttc 11526543  T
Q  230 aaaaaccaatctggaaccttgaattgacgagg 261  Q
    |||||||||| |||||||||||||||||||||    
T  11526542 aaaaaccaatatggaaccttgaattgacgagg 11526511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 130 - 261
Target Start/End: Complemental strand, 11534052 - 11533921
Alignment:
Q  130 gattttcttgagtctctcaagatcatccctcagcttcatgtcaagttgattggatacaacttgagagaattttccatccttgtaatccttctttctgttc 229  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  11534052 gattttcttgagtctctcaagatcatccctgagcttcctgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttc 11533953  T
Q  230 aaaaaccaatctggaaccttgaattgacgagg 261  Q
    |||||||||| |||||||||||||||||||||    
T  11533952 aaaaaccaatatggaaccttgaattgacgagg 11533921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 130 - 261
Target Start/End: Complemental strand, 11541469 - 11541338
Alignment:
Q  130 gattttcttgagtctctcaagatcatccctcagcttcatgtcaagttgattggatacaacttgagagaattttccatccttgtaatccttctttctgttc 229  Q
    |||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  11541469 gattttcttgagtctctcaagatcatccctgaatttcatgtcaagttgattggatacaacttgagaaaatttgccatccttgtaatctttctttctgttc 11541370  T
Q  230 aaaaaccaatctggaaccttgaattgacgagg 261  Q
    ||||||||||||||||||||||||||||||||    
T  11541369 aaaaaccaatctggaaccttgaattgacgagg 11541338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 68 - 261
Target Start/End: Original strand, 4860316 - 4860508
Alignment:
Q  68 aatcaatgacataatcaccacaaaaaccataatgaaataaacaatgaagtagcatctgacctgattttcttgagtctctcaagatcatccctcagcttca 167  Q
    ||||||| |||| ||| |||||||||||||||| ||||||||||| ||| ||| ||||||||   ||||||||||||||| | || ||| |||| |||||    
T  4860316 aatcaatcacatcatcgccacaaaaaccataat-aaataaacaataaagcagcgtctgacctatgtttcttgagtctctccaaattatctctcaacttca 4860414  T
Q  168 tgtcaagttgattggatacaacttgagagaattttccatccttgtaatccttctttctgttcaaaaaccaatctggaaccttgaattgacgagg 261  Q
    |||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  4860415 tgtcaagttggttggagacaacttgagaaaattttccatccttgtaatccttcttcctattcaaaaaccaatctggaaccttgaattgacgagg 4860508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1005 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold1005
Description:

Target: scaffold1005; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 130 - 261
Target Start/End: Complemental strand, 2612 - 2481
Alignment:
Q  130 gattttcttgagtctctcaagatcatccctcagcttcatgtcaagttgattggatacaacttgagagaattttccatccttgtaatccttctttctgttc 229  Q
    |||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  2612 gattttcttgagtctctcaagatcatccctgaatttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttc 2513  T
Q  230 aaaaaccaatctggaaccttgaattgacgagg 261  Q
    |||||||||| |||||||||||||||||||||    
T  2512 aaaaaccaatttggaaccttgaattgacgagg 2481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 151 - 264
Target Start/End: Complemental strand, 14927273 - 14927160
Alignment:
Q  151 atcatccctcagcttcatgtcaagttgattggatacaacttgagagaattttccatccttgtaatccttctttctgttcaaaaaccaatctggaaccttg 250  Q
    ||||||||||| ||||||||| |||||||| || ||||||||||| || || |||||||||||||||||||||||||||||||||||||| || ||||||    
T  14927273 atcatccctcaacttcatgtccagttgatttgaaacaacttgagaaaacttgccatccttgtaatccttctttctgttcaaaaaccaatcagggaccttg 14927174  T
Q  251 aattgacgagggtt 264  Q
    ||||| | ||||||    
T  14927173 aattgcctagggtt 14927160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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