View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19440_low_14 (Length: 242)
Name: NF19440_low_14
Description: NF19440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19440_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 37374429 - 37374234
Alignment:
| Q |
13 |
aaaatgtagcttaaaagaacaagcaagtaaagctaaaaatccagtaacttaaaagaagaatctatggttattgacatacctctgaaaccagaagccaaat |
112 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37374429 |
aaaatgtagcttaaaaaaacaagcaagtaaagctaaaaatccagtaacttaaaagaagaatctatggttattgacatacctctgaaaccagaagccaaat |
37374330 |
T |
|
| Q |
113 |
agaagcaagaaagagactaagcacattgtgaaacacttcataattgttgctggtacgactgttccaccatacaaaacacctcttacttaaatactc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37374329 |
agaagcaagaaagagactaagcacattgtgaaacacttcataattgttgctggtacgactgttccaccatacaacacacctcttacttaaatactc |
37374234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 37381411 - 37381216
Alignment:
| Q |
13 |
aaaatgtagcttaaaagaacaagcaagtaaagctaaaaatccagtaacttaaaagaagaatctatggttattgacatacctctgaaaccagaagccaaat |
112 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37381411 |
aaaatgcagcttaaaagaacaagcaagtaaagctcaaaatccagcaacttaaaagaagaatctatggttattgacatacctctgaaaccagaaatcaaat |
37381312 |
T |
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| Q |
113 |
agaagcaagaaagagactaagcacattgtgaaacacttcataattgttgctggtacgactgttccaccatacaaaacacctcttacttaaatactc |
208 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
37381311 |
agaagcaagaaagagactaagcacagtgtgaagcacttcataattgctgctggtacgactgttccaccatacaacacacctcttacttaagtactc |
37381216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 61 - 208
Target Start/End: Complemental strand, 37390280 - 37390127
Alignment:
| Q |
61 |
ttaaaagaagaatctatgg-ttattgacatacctctgaaaccagaagccaaatagaagcaagaaagagactaagcacattgtgaaacacttcataattgt |
159 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37390280 |
ttaaaagaagaatctatgggttattgacatacctgtgaaaccagaaaccaaatagaagcaagaaagagactaagcacattgtgaaacacttcataattgt |
37390181 |
T |
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| Q |
160 |
tgctggtacgactgttc-----caccatacaaaacacctcttacttaaatactc |
208 |
Q |
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||||||||||||||||| ||| | |||| ||||||||||||||||||||| |
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| T |
37390180 |
tgctggtacgactgttccatcacacaacacaacacacctcttacttaaatactc |
37390127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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