View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19440_low_15 (Length: 239)
Name: NF19440_low_15
Description: NF19440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19440_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 54498059 - 54498164
Alignment:
| Q |
118 |
gtgtgtctatgttttacctcaaaataagattggccagaaccaaaaataaagtcgacatcaccttgaatataacataaca-gtctttaaagtagtgtcgtc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
54498059 |
gtgtgtctatgttttacctcaaaataagattggccagaaccaaaaataaagtcgacatcaccttgaatataacataacatgtctttaaagtagtgtcgtc |
54498158 |
T |
|
| Q |
217 |
cctttg |
222 |
Q |
| |
|
|||||| |
|
|
| T |
54498159 |
cctttg |
54498164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 18744478 - 18744418
Alignment:
| Q |
131 |
ttacctcaaaataagattggccagaaccaaaaataaagtcgacatcaccttgaatataaca |
191 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
18744478 |
ttacctcaaaataagattgggcttgaccaaaaatgaagtcaacttcaccttgaatataaca |
18744418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 54497959 - 54497988
Alignment:
| Q |
18 |
aattctacaaagagtaaaatcataaggatg |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
54497959 |
aattctacaaagagtaaaatcataaggatg |
54497988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University