View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19440_low_16 (Length: 237)

Name: NF19440_low_16
Description: NF19440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19440_low_16
NF19440_low_16
[»] chr1 (6 HSPs)
chr1 (129-221)||(44179569-44179661)
chr1 (129-221)||(44206700-44206792)
chr1 (1-62)||(44179750-44179811)
chr1 (1-62)||(44206881-44206942)
chr1 (162-221)||(41556158-41556217)
chr1 (1-34)||(41556215-41556248)
[»] chr6 (1 HSPs)
chr6 (161-221)||(14926250-14926310)
[»] scaffold1005 (1 HSPs)
scaffold1005 (162-211)||(2377-2426)
[»] chr5 (13 HSPs)
chr5 (162-211)||(11504232-11504281)
chr5 (162-211)||(11511626-11511675)
chr5 (162-211)||(11519002-11519051)
chr5 (162-211)||(11526407-11526456)
chr5 (162-211)||(11533817-11533866)
chr5 (162-211)||(11541234-11541283)
chr5 (162-211)||(11496905-11496954)
chr5 (1-34)||(11496952-11496985)
chr5 (1-34)||(11504279-11504312)
chr5 (1-34)||(11511673-11511706)
chr5 (1-34)||(11519049-11519082)
chr5 (1-34)||(11526454-11526487)
chr5 (1-34)||(11541281-11541314)
[»] chr4 (2 HSPs)
chr4 (146-206)||(4860657-4860717)
chr4 (1-40)||(4860559-4860598)
[»] chr2 (1 HSPs)
chr2 (162-204)||(8474450-8474492)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 44179661 - 44179569
Alignment:
Q  129 ttttaaatgtgagctcaaaatcggaactacgaacctcttgttcatgtcaacatcagctttcttacagcagatgttagcaaatcttcttccaat 221  Q
    ||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44179661 ttttaaaagtgagagcaaaatcggaactacgaacctcttgttcatgtcaacatcagctttcttacagcagatgttagcaaatcttcttccaat 44179569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 44206792 - 44206700
Alignment:
Q  129 ttttaaatgtgagctcaaaatcggaactacgaacctcttgttcatgtcaacatcagctttcttacagcagatgttagcaaatcttcttccaat 221  Q
    ||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44206792 ttttaaaagtgagagcaaaatcggaactacgaacctcttgttcatgtcaacatcagctttcttacagcagatgttagcaaatcttcttccaat 44206700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 44179811 - 44179750
Alignment:
Q  1 tatccaactctgcagcactcaattcaccagccctaaaaatccaacaacaaaaacaacccatt 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44179811 tatccaactctgcagcactcaattcaccagccctaaaaatccaacaacaaaaacaacccatt 44179750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 44206942 - 44206881
Alignment:
Q  1 tatccaactctgcagcactcaattcaccagccctaaaaatccaacaacaaaaacaacccatt 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44206942 tatccaactctgcagcactcaattcaccagccctaaaaatccaacaacaaaaacaacccatt 44206881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 41556217 - 41556158
Alignment:
Q  162 cctcttgttcatgtcaacatcagctttcttacagcagatgttagcaaatcttcttccaat 221  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||    
T  41556217 cctcttgttcatgtcaacatcagccttcttacagcaaatgttagcaaatctcctaccaat 41556158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 41556248 - 41556215
Alignment:
Q  1 tatccaactctgcagcactcaattcaccagccct 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  41556248 tatccaactctgcagcacttaattcaccagccct 41556215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 14926310 - 14926250
Alignment:
Q  161 acctcttgttcatgtcaacatcagctttcttacagcagatgttagcaaatcttcttccaat 221  Q
    ||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||    
T  14926310 acctcttgttcatgtcaacatcagctttcttgcaacaaatgttagcaaatcttcttccaat 14926250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1005 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1005
Description:

Target: scaffold1005; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 2426 - 2377
Alignment:
Q  162 cctcttgttcatgtcaacatcagctttcttacagcagatgttagcaaatc 211  Q
    |||| |||||||||||||||||||||||||||| || |||||||||||||    
T  2426 cctcatgttcatgtcaacatcagctttcttacaacaaatgttagcaaatc 2377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 11504281 - 11504232
Alignment:
Q  162 cctcttgttcatgtcaacatcagctttcttacagcagatgttagcaaatc 211  Q
    |||| |||||||||||||||||||||||||||| || |||||||||||||    
T  11504281 cctcatgttcatgtcaacatcagctttcttacaacaaatgttagcaaatc 11504232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 11511675 - 11511626
Alignment:
Q  162 cctcttgttcatgtcaacatcagctttcttacagcagatgttagcaaatc 211  Q
    |||| |||||||||||||||||||||||||||| || |||||||||||||    
T  11511675 cctcatgttcatgtcaacatcagctttcttacaacaaatgttagcaaatc 11511626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 11519051 - 11519002
Alignment:
Q  162 cctcttgttcatgtcaacatcagctttcttacagcagatgttagcaaatc 211  Q
    |||| |||||||||||||||||||||||||||| || |||||||||||||    
T  11519051 cctcatgttcatgtcaacatcagctttcttacaacaaatgttagcaaatc 11519002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 11526456 - 11526407
Alignment:
Q  162 cctcttgttcatgtcaacatcagctttcttacagcagatgttagcaaatc 211  Q
    |||| |||||||||||||||||||||||||||| || |||||||||||||    
T  11526456 cctcatgttcatgtcaacatcagctttcttacaacaaatgttagcaaatc 11526407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 11533866 - 11533817
Alignment:
Q  162 cctcttgttcatgtcaacatcagctttcttacagcagatgttagcaaatc 211  Q
    |||| |||||||||||||||||||||||||||| || |||||||||||||    
T  11533866 cctcatgttcatgtcaacatcagctttcttacaacaaatgttagcaaatc 11533817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 11541283 - 11541234
Alignment:
Q  162 cctcttgttcatgtcaacatcagctttcttacagcagatgttagcaaatc 211  Q
    |||| |||||||||||||||||||||||||||| || |||||||||||||    
T  11541283 cctcatgttcatgtcaacatcagctttcttacaacaaatgttagcaaatc 11541234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 11496954 - 11496905
Alignment:
Q  162 cctcttgttcatgtcaacatcagctttcttacagcagatgttagcaaatc 211  Q
    |||| |||||||||||||||||||||||| ||| || |||||||||||||    
T  11496954 cctcatgttcatgtcaacatcagctttctcacaacaaatgttagcaaatc 11496905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 11496985 - 11496952
Alignment:
Q  1 tatccaactctgcagcactcaattcaccagccct 34  Q
    |||||||||||||||||||||||| |||||||||    
T  11496985 tatccaactctgcagcactcaatttaccagccct 11496952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 11504312 - 11504279
Alignment:
Q  1 tatccaactctgcagcactcaattcaccagccct 34  Q
    |||||||||||||||||||||||| |||||||||    
T  11504312 tatccaactctgcagcactcaatttaccagccct 11504279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 11511706 - 11511673
Alignment:
Q  1 tatccaactctgcagcactcaattcaccagccct 34  Q
    |||||||||||||||||||||||| |||||||||    
T  11511706 tatccaactctgcagcactcaatttaccagccct 11511673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 11519082 - 11519049
Alignment:
Q  1 tatccaactctgcagcactcaattcaccagccct 34  Q
    |||||||||||||||||||||||| |||||||||    
T  11519082 tatccaactctgcagcactcaatttaccagccct 11519049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 11526487 - 11526454
Alignment:
Q  1 tatccaactctgcagcactcaattcaccagccct 34  Q
    |||||||||||||||||||||||| |||||||||    
T  11526487 tatccaactctgcagcactcaatttaccagccct 11526454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 11541314 - 11541281
Alignment:
Q  1 tatccaactctgcagcactcaattcaccagccct 34  Q
    |||||||||||||||||||||||| |||||||||    
T  11541314 tatccaactctgcagcactcaatttaccagccct 11541281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 4860657 - 4860717
Alignment:
Q  146 aaatcggaactacgaacctcttgttcatgtcaacatcagctttcttacagcagatgttagc 206  Q
    |||||| |||||||||||||| |||||||||||||||| | ||||||||| |||| |||||    
T  4860657 aaatcgcaactacgaacctctagttcatgtcaacatcaaccttcttacagaagattttagc 4860717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 4860559 - 4860598
Alignment:
Q  1 tatccaactctgcagcactcaattcaccagccctaaaaat 40  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  4860559 tatccaactctgcagcactcaactcaccagccctaaaaat 4860598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 8474492 - 8474450
Alignment:
Q  162 cctcttgttcatgtcaacatcagctttcttacagcagatgtta 204  Q
    |||||||||||||||||||||||| |||||||| |||||||||    
T  8474492 cctcttgttcatgtcaacatcagccttcttacaacagatgtta 8474450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University