View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19440_low_17 (Length: 234)

Name: NF19440_low_17
Description: NF19440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19440_low_17
NF19440_low_17
[»] chr4 (16 HSPs)
chr4 (20-223)||(35645835-35646038)
chr4 (79-223)||(35655322-35655466)
chr4 (138-223)||(35676449-35676534)
chr4 (20-64)||(31254477-31254521)
chr4 (20-64)||(42662433-42662477)
chr4 (20-69)||(9279192-9279241)
chr4 (149-223)||(35672949-35673025)
chr4 (20-64)||(13555537-13555581)
chr4 (20-64)||(17111738-17111782)
chr4 (20-64)||(28245596-28245640)
chr4 (24-64)||(50543404-50543444)
chr4 (24-64)||(50543641-50543681)
chr4 (20-70)||(27634586-27634636)
chr4 (20-64)||(11036816-11036860)
chr4 (20-64)||(27634151-27634195)
chr4 (20-64)||(39902633-39902677)
[»] scaffold0059 (1 HSPs)
scaffold0059 (128-223)||(4177-4273)
[»] scaffold0129 (2 HSPs)
scaffold0129 (20-64)||(14508-14552)
scaffold0129 (20-57)||(14280-14317)
[»] chr3 (10 HSPs)
chr3 (20-64)||(34992520-34992564)
chr3 (20-64)||(35038264-35038308)
chr3 (20-64)||(35038498-35038542)
chr3 (21-62)||(22729072-22729113)
chr3 (19-64)||(27086557-27086602)
chr3 (20-64)||(34992811-34992856)
chr3 (20-64)||(38791520-38791564)
chr3 (20-64)||(19954288-19954332)
chr3 (20-64)||(39620296-39620340)
chr3 (20-64)||(39683338-39683382)
[»] chr1 (23 HSPs)
chr1 (20-64)||(25713363-25713407)
chr1 (19-64)||(2859696-2859741)
chr1 (19-64)||(25145554-25145599)
chr1 (20-64)||(2859462-2859506)
chr1 (20-64)||(38733122-38733166)
chr1 (20-64)||(8870759-8870803)
chr1 (21-61)||(17402555-17402595)
chr1 (20-64)||(20208596-20208640)
chr1 (20-64)||(26603398-26603442)
chr1 (20-64)||(33156939-33156983)
chr1 (20-64)||(35772234-35772278)
chr1 (20-64)||(38668330-38668374)
chr1 (20-64)||(38733352-38733396)
chr1 (20-64)||(39808436-39808480)
chr1 (20-64)||(51459900-51459944)
chr1 (20-64)||(51460152-51460196)
chr1 (20-64)||(52961552-52961596)
chr1 (20-63)||(7826101-7826144)
chr1 (20-69)||(38080570-38080619)
chr1 (20-64)||(11924891-11924935)
chr1 (20-64)||(16163137-16163181)
chr1 (20-64)||(26173526-26173570)
chr1 (20-60)||(27413556-27413596)
[»] chr5 (14 HSPs)
chr5 (20-61)||(15480295-15480336)
chr5 (20-64)||(18333535-18333579)
chr5 (20-64)||(24647666-24647710)
chr5 (20-64)||(37656585-37656629)
chr5 (20-64)||(95336-95380)
chr5 (20-64)||(2063803-2063847)
chr5 (20-64)||(8081184-8081228)
chr5 (20-64)||(9368800-9368844)
chr5 (20-64)||(20510712-20510756)
chr5 (20-64)||(24269940-24269984)
chr5 (20-64)||(24346571-24346615)
chr5 (20-64)||(33337308-33337352)
chr5 (20-52)||(37781709-37781741)
chr5 (20-52)||(37782120-37782152)
[»] scaffold0001 (1 HSPs)
scaffold0001 (20-64)||(429843-429887)
[»] chr8 (15 HSPs)
chr8 (20-64)||(39052999-39053043)
chr8 (21-62)||(5590439-5590480)
chr8 (20-64)||(20094630-20094674)
chr8 (20-64)||(24532491-24532535)
chr8 (20-64)||(31197585-31197629)
chr8 (20-64)||(39052607-39052651)
chr8 (21-60)||(422288-422327)
chr8 (20-63)||(5675804-5675847)
chr8 (22-64)||(31197817-31197859)
chr8 (26-64)||(39052770-39052808)
chr8 (20-64)||(3157630-3157674)
chr8 (20-64)||(11232499-11232543)
chr8 (20-64)||(12317016-12317060)
chr8 (20-64)||(29099810-29099854)
chr8 (20-56)||(41790637-41790673)
[»] chr7 (16 HSPs)
chr7 (20-64)||(3519795-3519839)
chr7 (24-64)||(33834396-33834436)
chr7 (20-77)||(26239986-26240043)
chr7 (20-64)||(3392952-3392996)
chr7 (20-64)||(9689160-9689204)
chr7 (20-64)||(48243507-48243551)
chr7 (20-55)||(3520110-3520145)
chr7 (20-59)||(32278955-32278994)
chr7 (20-64)||(2315340-2315384)
chr7 (20-64)||(2404244-2404288)
chr7 (20-64)||(3038154-3038198)
chr7 (20-64)||(21055023-21055067)
chr7 (20-64)||(42985193-42985237)
chr7 (20-64)||(43688229-43688273)
chr7 (20-64)||(47710413-47710457)
chr7 (20-64)||(47722069-47722113)
[»] chr6 (12 HSPs)
chr6 (20-64)||(3680216-3680260)
chr6 (20-64)||(8567028-8567072)
chr6 (20-64)||(12330360-12330404)
chr6 (20-64)||(21214955-21214999)
chr6 (20-64)||(2753228-2753272)
chr6 (20-64)||(6542778-6542822)
chr6 (20-64)||(6543013-6543057)
chr6 (28-64)||(24554087-24554123)
chr6 (20-64)||(25065164-25065208)
chr6 (20-64)||(30256783-30256827)
chr6 (20-64)||(31961148-31961192)
chr6 (28-64)||(33494744-33494780)
[»] chr2 (14 HSPs)
chr2 (20-64)||(17719370-17719414)
chr2 (20-69)||(40379514-40379563)
chr2 (20-64)||(94090-94134)
chr2 (20-64)||(16419472-16419516)
chr2 (20-64)||(40379279-40379323)
chr2 (22-63)||(10523224-10523265)
chr2 (20-64)||(93193-93236)
chr2 (20-64)||(12343820-12343864)
chr2 (20-64)||(16533517-16533561)
chr2 (20-64)||(21591751-21591795)
chr2 (20-64)||(31700818-31700862)
chr2 (20-64)||(33606124-33606168)
chr2 (20-64)||(37812338-37812382)
chr2 (20-64)||(42639684-42639728)
[»] scaffold0005 (1 HSPs)
scaffold0005 (20-63)||(288727-288770)
[»] scaffold0400 (1 HSPs)
scaffold0400 (23-64)||(3814-3855)
[»] scaffold0365 (1 HSPs)
scaffold0365 (23-64)||(4458-4499)
[»] scaffold0519 (1 HSPs)
scaffold0519 (20-64)||(1886-1930)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 35645835 - 35646038
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactcttaccagatgtcaatggaagaaccaataaaatcatagcaccaagtgatatataagaag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35645835 ataaacacattgtcagaccatcacctattcgatgtgggactcttaacatatgtcaatggaagaaccaataaaatcatagcaccaagtgatatataagaag 35645934  T
Q  120 gaagagaatggtttttatcactcaacaaaaaccaaagcttaagccatgtccacctttctgccaagttctctttcacatgaaatcttctcttcattcccta 219  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  35645935 gaagagagtggtttttatcactcaacaaaaaccaaagcttaagccatgtccaccattctgccaagttctctttcacatgaaatcttctcttcattccgta 35646034  T
Q  220 tgct 223  Q
    ||||    
T  35646035 tgct 35646038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 79 - 223
Target Start/End: Original strand, 35655322 - 35655466
Alignment:
Q  79 aagaaccaataaaatcatagcaccaagtgatatataagaaggaagagaatggtttttatcactcaacaaaaaccaaagcttaagccatgtccacctttct 178  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||||||||||||||    
T  35655322 aagaaccattaaaatcataccaccaagtgatatataagaaggaagagagtggtttttatcgctcaacagaaaccaaaggttaagccatgtccacctttct 35655421  T
Q  179 gccaagttctctttcacatgaaatcttctcttcattccctatgct 223  Q
     |  |||||||||||||| ||||||||||||||||||||||||||    
T  35655422 acacagttctctttcacaggaaatcttctcttcattccctatgct 35655466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 35676449 - 35676534
Alignment:
Q  138 cactcaacaaaaaccaaagcttaagccatgtccacctttctgccaagttctctttcacatgaaatcttctcttcattccctatgct 223  Q
    ||||||| | ||||||||||||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||    
T  35676449 cactcaatagaaaccaaagcttaagccatgtccacatttctacaaagttttctttcacatgaaatcttctcttcattccctatgct 35676534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 31254477 - 31254521
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  31254477 ataaacacattgtcaggccatcacctatccgatgtgggactctta 31254521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 42662477 - 42662433
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||||||||| |||||||||||||||| |||||    
T  42662477 ataaacacattgtcagaccatctcctattcgatgtgggattctta 42662433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 9279241 - 9279192
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactcttaccaga 69  Q
    |||||||||||||||| ||||||||||| ||||||| |||||||| ||||    
T  9279241 ataaacacattgtcaggccatcacctatccgatgtgcgactcttaacaga 9279192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 223
Target Start/End: Original strand, 35672949 - 35673025
Alignment:
Q  149 aaccaaagcttaagccatgtccacctttctgccaagttctctttcacatgaaatcttc--tcttcattccctatgct 223  Q
    |||||||| ||||||||||||||||||||| | || ||||||||| |||||||  |||  | |||||||||||||||    
T  35672949 aaccaaaggttaagccatgtccacctttctacaaaattctctttcgcatgaaagtttctatattcattccctatgct 35673025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 13555537 - 13555581
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||| |||||||||| |||||||||||| ||||||||||||||||    
T  13555537 ataagcacattgtcaaaccatcacctatccgatgtgggactctta 13555581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 17111782 - 17111738
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| |||||||||||  |||||||||||||||    
T  17111782 ataaacacattgtcaggccatcacctatctgatgtgggactctta 17111738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 28245596 - 28245640
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| ||||||||||| ||||||| ||||||||    
T  28245596 ataaacacattgtcaggccatcacctatccgatgtgagactctta 28245640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 50543404 - 50543444
Alignment:
Q  24 acacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  50543404 acacattgtcagaccatcacctatccgatgtggggctctta 50543444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 50543641 - 50543681
Alignment:
Q  24 acacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  50543641 acacattgtcaggccatcacctatccgatgtgggactctta 50543681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 27634586 - 27634636
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactcttaccagat 70  Q
    |||||||||||||||| ||||  ||||| |||||||||||||||| |||||    
T  27634586 ataaacacattgtcaggccatgtcctatccgatgtgggactcttaacagat 27634636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 11036816 - 11036860
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| ||||||||||| |||||| | |||||||    
T  11036816 ataaacacattgtcaggccatcacctatccgatgttgtactctta 11036860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 27634151 - 27634195
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| ||||  ||||| ||||||||||||||||    
T  27634151 ataaacacattgtcaggccatgtcctatccgatgtgggactctta 27634195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 39902633 - 39902677
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| ||||  ||||| ||||||||||||||||    
T  39902633 ataaacacattgtcaggccatgtcctatccgatgtgggactctta 39902677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 4177 - 4273
Alignment:
Q  128 tggtttttatcactcaaca-aaaaccaaagcttaagccatgtccacctttctgccaagttctctttcacatgaaatcttctcttcattccctatgct 223  Q
    |||||||||||| | |||| ||||  |||||||||||||||||||||||||| | | |||||||||| ||||||| ||||| |||||||||||||||    
T  4177 tggtttttatcattaaacagaaaattaaagcttaagccatgtccacctttctacaatgttctctttcgcatgaaagcttctattcattccctatgct 4273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 14552 - 14508
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  14552 ataaacacattgtcagaccatcacctatccgatgtgggactctta 14508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 14317 - 14280
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtggg 57  Q
    |||||||||||||||||||||||||||| |||||||||    
T  14317 ataaacacattgtcagaccatcacctatccgatgtggg 14280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 34992564 - 34992520
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  34992564 ataaacacattgtcagaccatcacctatccgatgtgggactctta 34992520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 35038264 - 35038308
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  35038264 ataaacacattgtcaggccatcacctatccgatgtgggactctta 35038308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 35038498 - 35038542
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  35038498 ataaacacattgtcaggccatcacctatccgatgtgggactctta 35038542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 22729113 - 22729072
Alignment:
Q  21 taaacacattgtcagaccatcacctattcgatgtgggactct 62  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  22729113 taaacacattgtcagaccatctcctatccgatgtgggactct 22729072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 27086602 - 27086557
Alignment:
Q  19 aataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||||||||||||| |||||||||||  |||||||||||||||    
T  27086602 aataaacacattgtcaggccatcacctatctgatgtgggactctta 27086557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 34992856 - 34992811
Alignment:
Q  20 ataaacacatt-gtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||    
T  34992856 ataaacacatttgtcagaccatcacctatccgatgtgggactctta 34992811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 38791520 - 38791564
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||| |||||||||||||||| ||||| ||||||||||||||||    
T  38791520 ataaatacattgtcagaccatctcctatccgatgtgggactctta 38791564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 19954288 - 19954332
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||| |||||||||||||| |||||  |||||||||||||||    
T  19954288 ataaacatattgtcagaccatctcctataagatgtgggactctta 19954332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 39620340 - 39620296
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||||||||||||  |||||||||| ||||||| ||||||||    
T  39620340 ataaacacattgtcaggtcatcacctatccgatgtgagactctta 39620296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 39683338 - 39683382
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||||||||||||  ||||| |||| ||||||||||||||||    
T  39683338 ataaacacattgtcaggtcatcatctatccgatgtgggactctta 39683382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 25713407 - 25713363
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  25713407 ataaacacattgtcagaccatcacctatccgatgtgggactctta 25713363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 2859696 - 2859741
Alignment:
Q  19 aataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||    
T  2859696 aataaacacattgtcagaccatcacctatccgatgtgagactctta 2859741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 25145554 - 25145599
Alignment:
Q  19 aataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||    
T  25145554 aataaacacattgtcagaccatcacctatccgatgtgagactctta 25145599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 2859462 - 2859506
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  2859462 ataaacacattgtcaggccatcacctatccgatgtgggactctta 2859506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 38733166 - 38733122
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||||||||||| |||||||||||| |||||||    
T  38733166 ataaacacattgtcagaccatcacatattcgatgtggaactctta 38733122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 8870759 - 8870803
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||||||||||| ||||||||| || ||||||||||||||||    
T  8870759 ataaacacattgtcacaccatcaccgatccgatgtgggactctta 8870803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 17402595 - 17402555
Alignment:
Q  21 taaacacattgtcagaccatcacctattcgatgtgggactc 61  Q
    |||||| |||||||||||||||||||| |||||||||||||    
T  17402595 taaacaaattgtcagaccatcacctatccgatgtgggactc 17402555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 20208596 - 20208640
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||||||||  ||||| ||||||||||||||||    
T  20208596 ataaacacattgtcagaccatgtcctatccgatgtgggactctta 20208640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 26603442 - 26603398
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||| |||||||||||||| ||||||||||||| ||||||||    
T  26603442 ataaacatattgtcagaccatctcctattcgatgtgagactctta 26603398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 33156983 - 33156939
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||||||||| ||||| |||||||| |||||||    
T  33156983 ataaacacattgtcagaccatctcctatccgatgtggaactctta 33156939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 35772278 - 35772234
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||    
T  35772278 ataaacacattgtcaggccatctcctatccgatgtgggactctta 35772234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 38668374 - 38668330
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||||||||||| |||||||| ||| ||||||||||||||||    
T  38668374 ataaacacattgtcaaaccatcacatatccgatgtgggactctta 38668330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 38733396 - 38733352
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||| |||||||||||||||| ||| ||||||||||||||||    
T  38733396 ataaacatattgtcagaccatcacatatccgatgtgggactctta 38733352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 39808480 - 39808436
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||    
T  39808480 ataaacacattgtcagaccatcacatatccaatgtgggactctta 39808436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 51459900 - 51459944
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||||||||| || ||||||||||| ||||||||||||||||    
T  51459900 ataaacacattgttaggccatcacctatccgatgtgggactctta 51459944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 51460152 - 51460196
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||||||||| || ||||||||||| ||||||||||||||||    
T  51460152 ataaacacattgttaggccatcacctatccgatgtgggactctta 51460196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 52961596 - 52961552
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||||    
T  52961596 ataaacacattgtcagaccatctcctatccgatgtgggacactta 52961552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 7826101 - 7826144
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctt 63  Q
    ||||||||||||||||||||||   |||||||||||||||||||    
T  7826101 ataaacacattgtcagaccatcttttattcgatgtgggactctt 7826144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 38080619 - 38080570
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactcttaccaga 69  Q
    |||||||||||||||| ||||| || || |||||||||||||||| ||||    
T  38080619 ataaacacattgtcaggccatctcccatccgatgtgggactcttaacaga 38080570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 11924935 - 11924891
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||| |||||||||||||||||||| |||||||  |||||||    
T  11924935 ataaacatattgtcagaccatcacctatccgatgtgtaactctta 11924891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 16163181 - 16163137
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||   |||||||||| ||||||||||||||||    
T  16163181 ataaacacattgtcaagtcatcacctatccgatgtgggactctta 16163137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 26173526 - 26173570
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||||||||| | |||  |||||||||||||||    
T  26173526 ataaacacattgtcagaccatctcatatctgatgtgggactctta 26173570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 27413596 - 27413556
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggact 60  Q
    ||||||| |||||||| ||||||||||| ||||||||||||    
T  27413596 ataaacatattgtcaggccatcacctatgcgatgtgggact 27413556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 15480336 - 15480295
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactc 61  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  15480336 ataaacacattgtcagaccatcacctatccgatgtgggactc 15480295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 18333535 - 18333579
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||||||||| ||||| |||||||||| |||||    
T  18333535 ataaacacattgtcagaccatctcctatccgatgtgggattctta 18333579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 24647710 - 24647666
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||| | ||||||||||| ||||||||||||||||    
T  24647710 ataaacacattgtccggccatcacctatccgatgtgggactctta 24647666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 37656629 - 37656585
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||||||||||||||||| |||||| ||| ||||||||||||    
T  37656629 ataaacacattgtcagaccattacctatccgacgtgggactctta 37656585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 95336 - 95380
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||||||||||||  |||||||||| ||||||| ||||||||    
T  95336 ataaacacattgtcaggtcatcacctatccgatgtgtgactctta 95380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 2063803 - 2063847
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||||||||   |||| ||||||||||||||||    
T  2063803 ataaacacattgtcagaccatgttctatccgatgtgggactctta 2063847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 8081184 - 8081228
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| ||||  ||||| ||||||||||||||||    
T  8081184 ataaacacattgtcaggccatgtcctatccgatgtgggactctta 8081228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 9368844 - 9368800
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||  ||||| ||||| ||||||||||||||||    
T  9368844 ataaacacattgtcatgccatctcctatccgatgtgggactctta 9368800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 20510712 - 20510756
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||| |||||||| ||||||||||| ||||||||| ||||||    
T  20510712 ataaacatattgtcaggccatcacctatccgatgtggggctctta 20510756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 24269940 - 24269984
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| ||||  ||||| ||||||||||||||||    
T  24269940 ataaacacattgtcaggccatgtcctatccgatgtgggactctta 24269984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 24346571 - 24346615
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| ||||  ||||| ||||||||||||||||    
T  24346571 ataaacacattgtcaggccatgtcctatccgatgtgggactctta 24346615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 33337308 - 33337352
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||| |||||||| ||||||||||| | ||||||||||||||    
T  33337308 ataaacatattgtcaggccatcacctatccaatgtgggactctta 33337352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 37781741 - 37781709
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgat 52  Q
    |||||||||||||||||||||||||||| ||||    
T  37781741 ataaacacattgtcagaccatcacctatccgat 37781709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 37782120 - 37782152
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgat 52  Q
    |||||||||||||||||||||||||||| ||||    
T  37782120 ataaacacattgtcagaccatcacctatccgat 37782152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 429887 - 429843
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  429887 ataaacacattgtcaggccatcacctatccgatgtgggactctta 429843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 39052999 - 39053043
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  39052999 ataaacacattgtcaggccatcacctatccgatgtgggactctta 39053043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 5590439 - 5590480
Alignment:
Q  21 taaacacattgtcagaccatcacctattcgatgtgggactct 62  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  5590439 taaacacattgtcagaccatctcctatccgatgtgggactct 5590480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 20094630 - 20094674
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| |||||  |||||||||||||||||||||    
T  20094630 ataaacacattgtcaggccatcttctattcgatgtgggactctta 20094674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 24532491 - 24532535
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||    
T  24532491 ataaacacattgtcaggccatctcctatccgatgtgggactctta 24532535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 31197629 - 31197585
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||||||||||||||||||||||||  ||||| |||||||||    
T  31197629 ataaacacattgtcagaccatcacctatctgatgtaggactctta 31197585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 39052607 - 39052651
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| |||||||||||  |||||||||||||||    
T  39052607 ataaacacattgtcaggccatcacctatctgatgtgggactctta 39052651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 422288 - 422327
Alignment:
Q  21 taaacacattgtcagaccatcacctattcgatgtgggact 60  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  422288 taaacacattgtcagaccatctcctatccgatgtgggact 422327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 5675804 - 5675847
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctt 63  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||    
T  5675804 ataaacacattgtcagaccatcatctatccgatgtaggactctt 5675847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 31197859 - 31197817
Alignment:
Q  22 aaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||| |||||||||||  |||||||||||||||    
T  31197859 aaacacattgtcaggccatcacctatctgatgtgggactctta 31197817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 39052770 - 39052808
Alignment:
Q  26 acattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  39052770 acattgtcaggccatcacctatccgatgtgggactctta 39052808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 3157630 - 3157674
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||| |||||| ||| ||||||||||| ||||||||||||||||    
T  3157630 ataaatacattgccaggccatcacctatccgatgtgggactctta 3157674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 11232499 - 11232543
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||||||||  ||| | ||||||||||||||||    
T  11232499 ataaacacattgtcagaccatgtcctgtccgatgtgggactctta 11232543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 12317060 - 12317016
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||||||||  ||| | ||||||||||||||||    
T  12317060 ataaacacattgtcagaccatgtcctgtccgatgtgggactctta 12317016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 29099810 - 29099854
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||||||||||||||||||  ||||||||| || ||||||||    
T  29099810 ataaacacattgtcagaccatcttctattcgatatgagactctta 29099854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 41790673 - 41790637
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgg 56  Q
    ||||||||||||||||  |||||||||||||||||||    
T  41790673 ataaacacattgtcaggtcatcacctattcgatgtgg 41790637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 3519795 - 3519839
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  3519795 ataaacacattgtcaggccatcacctatccgatgtgggactctta 3519839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 33834436 - 33834396
Alignment:
Q  24 acacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  33834436 acacattgtcagaccatcacctatccgatgtgggactctta 33834396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 26239986 - 26240043
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactcttaccagatgtcaatg 77  Q
    |||||||||||||||||||||  ||||| |||||| ||||||||| || |||||||||    
T  26239986 ataaacacattgtcagaccatgtcctatccgatgtcggactcttaacacatgtcaatg 26240043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 3392996 - 3392952
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| ||||||||||| ||||||| ||||||||    
T  3392996 ataaacacattgtcaggccatcacctatccgatgtgagactctta 3392952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 9689160 - 9689204
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||| |||||||||| |||||||||||| ||||||||||||||||    
T  9689160 ataagcacattgtcaaaccatcacctatccgatgtgggactctta 9689204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 48243507 - 48243551
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| ||||||| ||||| ||||||||||||||    
T  48243507 ataaacacattgtcaggccatcacatattcaatgtgggactctta 48243551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 3520110 - 3520145
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtg 55  Q
    |||||||||||||||||||||||||||| |||||||    
T  3520110 ataaacacattgtcagaccatcacctatccgatgtg 3520145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 32278955 - 32278994
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggac 59  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  32278955 ataaacacattgtcagaccatcacatatccgatgtgggac 32278994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 2315340 - 2315384
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||| |||| ||||||||||||| |||||||||||||| |||||    
T  2315340 ataaatacatagtcagaccatcacatattcgatgtgggattctta 2315384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 2404244 - 2404288
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| ||||| ||||  ||||||||||||||||    
T  2404244 ataaacacattgtcagtccatctcctaaccgatgtgggactctta 2404288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 3038154 - 3038198
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||||||||| |||| ||| | ||||||||||||||||||||    
T  3038154 ataaacacattgttagacaatctcttattcgatgtgggactctta 3038198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 21055023 - 21055067
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||| |||||||| ||||||||||| |||| |||||||||||    
T  21055023 ataaacatattgtcaggccatcacctatccgatatgggactctta 21055067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 42985193 - 42985237
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||||||||||| |||||||| ||| ||||||| ||||||||    
T  42985193 ataaacacattgtcaaaccatcacatatccgatgtgagactctta 42985237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 43688229 - 43688273
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| ||||  ||||| ||||||||||||||||    
T  43688229 ataaacacattgtcaggccatgtcctatccgatgtgggactctta 43688273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 47710457 - 47710413
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||||||||| || ||||||||||| ||||||| ||||||||    
T  47710457 ataaacacattgtaaggccatcacctatccgatgtgagactctta 47710413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 47722113 - 47722069
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||||||||| || ||||||||||| ||||||| ||||||||    
T  47722113 ataaacacattgtaaggccatcacctatccgatgtgagactctta 47722069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 3680260 - 3680216
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||    
T  3680260 ataaacacattgtcagaccatcacatatccgatgtgggactctta 3680216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 8567028 - 8567072
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||    
T  8567028 ataaacacattgtcagaccatcacctatccgaggtgggactctta 8567072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 12330360 - 12330404
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||||||||  ||||| ||||||||||||||||    
T  12330360 ataaacacattgtcagaccatgtcctatccgatgtgggactctta 12330404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 21214999 - 21214955
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||||||||| |||||||||||||||||| ||| ||||||||    
T  21214999 ataaacacattgtgagaccatcacctattcgacgtgtgactctta 21214955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 2753272 - 2753228
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||||||||||||| ||||| || | ||||||||||||||||    
T  2753272 ataaacacattgtcagatcatcatctttccgatgtgggactctta 2753228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 6542778 - 6542822
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||| |||||||||||||| ||||| ||||||| ||||||||    
T  6542778 ataaacagattgtcagaccatctcctatccgatgtgagactctta 6542822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 6543013 - 6543057
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||||||||| | ||| |||||||| |||||||    
T  6543013 ataaacacattgtcagaccatctcttatccgatgtggaactctta 6543057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 24554123 - 24554087
Alignment:
Q  28 attgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  24554123 attgtcagaccatctcctatccgatgtgggactctta 24554087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 25065164 - 25065208
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||| |||||||||||||  ||||| ||||||||||||||||    
T  25065164 ataaacatattgtcagaccatgtcctatccgatgtgggactctta 25065208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 30256827 - 30256783
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||| ||||||||  |||||||||| ||||||||||||||||    
T  30256827 ataaacatattgtcaggtcatcacctatccgatgtgggactctta 30256783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 31961192 - 31961148
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| ||||||| |||  |||||||||||||||    
T  31961192 ataaacacattgtcaggccatcacatatctgatgtgggactctta 31961148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 33494780 - 33494744
Alignment:
Q  28 attgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  33494780 attgtcagaccatctcctatccgatgtgggactctta 33494744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 17719414 - 17719370
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  17719414 ataaacacattgtcaggccatcacctatccgatgtgggactctta 17719370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 40379514 - 40379563
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactcttaccaga 69  Q
    ||||||||| |||||| ||||||||||| |||||||||||||||| ||||    
T  40379514 ataaacacactgtcaggccatcacctatccgatgtgggactcttaacaga 40379563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 94090 - 94134
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||||| |||||| ||||||||||| ||||||||||||||||    
T  94090 ataaacacactgtcaggccatcacctatccgatgtgggactctta 94134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 16419516 - 16419472
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||||||||  ||||| ||||||||||||||||    
T  16419516 ataaacacattgtcagaccatgtcctatccgatgtgggactctta 16419472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 40379279 - 40379323
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||||| |||||| ||||||||||| ||||||||||||||||    
T  40379279 ataaacacactgtcaggccatcacctatccgatgtgggactctta 40379323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 10523265 - 10523224
Alignment:
Q  22 aaacacattgtcagaccatcacctattcgatgtgggactctt 63  Q
    |||||||||||||||||||| | ||| |||||||||||||||    
T  10523265 aaacacattgtcagaccatctcttatccgatgtgggactctt 10523224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 93193 - 93236
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| | ||||||||| ||||||||||||||||    
T  93193 ataaacacattgtcaggc-atcacctatccgatgtgggactctta 93236  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 12343820 - 12343864
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||| ||||||||| ||||||| ||||| ||||||||||||||||    
T  12343820 ataagcacattgtctgaccatctcctatccgatgtgggactctta 12343864  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 16533561 - 16533517
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| ||||||||||| || ||| |||||||||    
T  16533561 ataaacacattgtcaggccatcacctatccggtgtaggactctta 16533517  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 21591795 - 21591751
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||| |||||||||||| | |||| |||||||||||||||||    
T  21591795 ataaacaaattgtcagaccaactcctaatcgatgtgggactctta 21591751  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 31700818 - 31700862
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| ||||||||||| |||||||  |||||||    
T  31700818 ataaacacattgtcaggccatcacctatccgatgtgtaactctta 31700862  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 33606124 - 33606168
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||||||| |||| ||||| ||||| ||||||||||||||||    
T  33606124 ataaacacattttcaggccatctcctatccgatgtgggactctta 33606168  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 37812338 - 37812382
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||| ||||  ||||| ||||||||||||||||    
T  37812338 ataaacacattgtcaggccatgtcctatccgatgtgggactctta 37812382  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 42639684 - 42639728
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||||||||  | ||||| ||||||||||||||    
T  42639684 ataaacacattgtcagaccatgtcatattcaatgtgggactctta 42639728  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 288727 - 288770
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctt 63  Q
    ||||| |||||||||||||||| ||||| |||||||||||||||    
T  288727 ataaatacattgtcagaccatctcctatccgatgtgggactctt 288770  T

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Target: scaffold0400 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 3855 - 3814
Alignment:
Q  23 aacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||||||||| |||||| |||| ||||||||||||||||    
T  3855 aacacattgtcaggccatcagctatccgatgtgggactctta 3814  T

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Target: scaffold0365 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 4499 - 4458
Alignment:
Q  23 aacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    ||||||||||||| |||||| |||| ||||||||||||||||    
T  4499 aacacattgtcaggccatcagctatccgatgtgggactctta 4458  T

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Target: scaffold0519 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 1930 - 1886
Alignment:
Q  20 ataaacacattgtcagaccatcacctattcgatgtgggactctta 64  Q
    |||||||||||||||||||||  ||| | ||||||||||||||||    
T  1930 ataaacacattgtcagaccatgtcctgtccgatgtgggactctta 1886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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