View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19440_low_18 (Length: 213)
Name: NF19440_low_18
Description: NF19440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19440_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 40205195 - 40205001
Alignment:
| Q |
1 |
taccaaagttgttaatattacaaaaattgtcctccaaaccaacctaaataggttgagcttgtacatttgtatgccagggattggaatttttatgttctta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40205195 |
taccaaagttgttaatattacaaaaattgtcctccaaaccaacctaaataggttgagcttgtacatttgtatgccagggattggaatttttatgttctta |
40205096 |
T |
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| Q |
101 |
ttcacaaaatcactgcgagggaatctttttgccatgtaattttcgacgaatgcataaaggggttggcagtagacttggtatgcaccaatgaggtg |
195 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40205095 |
ttcacaaaatcactgcgagggaatctttttgccgtgtaattttcgacgaatgcataaaggggttggcagtagacttggtacgcaccaatgaggtg |
40205001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 40209241 - 40209047
Alignment:
| Q |
1 |
taccaaagttgttaatattacaaaaattgtcctccaaaccaacctaaataggttgagcttgtacatttgtatgccagggattggaatttttatgttctta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
40209241 |
taccaaagttgttaatattacaaaaattgtcctccaaaccaatctaaataggttgagcttgcacatttgtctgccagggattggaatttttatgttctta |
40209142 |
T |
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| Q |
101 |
ttcacaaaatcactgcgagggaatctttttgccatgtaattttcgacgaatgcataaaggggttggcagtagacttggtatgcaccaatgaggtg |
195 |
Q |
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||||||| |||||| ||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40209141 |
ttcacaagatcactctgagggaatcttttcgctgtgtaattttcaacgaatgcataaaggggttggcagtagacttggtatgcaccaatgaggtg |
40209047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 40201603 - 40201409
Alignment:
| Q |
1 |
taccaaagttgttaatattacaaaaattgtcctccaaaccaacctaaataggttgagcttgtacatttgtatgccagggattggaatttttatgttctta |
100 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40201603 |
taccaaagttgataatattacaaaaattgtcctccaaaccaatctaaataggttgagcttgtacatttgtatgccagggattggaatttttatgttctta |
40201504 |
T |
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| Q |
101 |
ttcacaaaatcactgcgagggaatctttttgccatgtaattttcgacgaatgcataaaggggttggcagtagacttggtatgcaccaatgaggtg |
195 |
Q |
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|||||||||||||| ||||||||||||| ||| ||||| |||| |||||||||||||||||||||||||| |||||||||| ||| || ||||| |
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| T |
40201503 |
ttcacaaaatcactctgagggaatcttttcgccgtgtaactttcaacgaatgcataaaggggttggcagtaaacttggtatgaacctataaggtg |
40201409 |
T |
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