View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19440_low_2 (Length: 700)

Name: NF19440_low_2
Description: NF19440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19440_low_2
NF19440_low_2
[»] chr2 (3 HSPs)
chr2 (185-377)||(37568326-37568518)
chr2 (370-562)||(37568543-37568737)
chr2 (10-69)||(37568113-37568172)
[»] chr5 (3 HSPs)
chr5 (495-587)||(7739657-7739750)
chr5 (484-565)||(19940793-19940872)
chr5 (484-565)||(19945547-19945626)
[»] chr8 (1 HSPs)
chr8 (484-642)||(26199567-26199730)
[»] chr7 (1 HSPs)
chr7 (484-565)||(6693597-6693676)
[»] chr6 (4 HSPs)
chr6 (484-565)||(795145-795224)
chr6 (484-565)||(799900-799979)
chr6 (484-565)||(8269849-8269928)
chr6 (484-565)||(8274564-8274643)


Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 185 - 377
Target Start/End: Original strand, 37568326 - 37568518
Alignment:
Q  185 gtaatacaaatgatggtttttaatcatttctaacgagtaaaacataatattctagagaggaaattctctctatcctttgccatggagaaaccgttttacg 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37568326 gtaatacaaatgatggtttttaatcatttctaacgagtaaaacataatattctagagaggaacttctctctatcctttgccatggagaaaccgttttacg 37568425  T
Q  285 tcttctccactcccacccttgaacctgttggtgaatagtgtgtatgacccaatgcattgcatgtgggtgaagtcaaaccaaagaaatttgcta 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37568426 tcttctccactcccacccttgaacctgttggtgaatagtgtgtatgacccaatgcattgcatgtgggtgaagtcaaaccaaagaaatttgcta 37568518  T

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Target: chr2; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 370 - 562
Target Start/End: Original strand, 37568543 - 37568737
Alignment:
Q  370 atttgctaataaatgcatggtgcatttttcctttaggtgcataggctagtagttggca-------gtgcaggaagcttgaaaataaacacctggtacaag 462  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||       |||||||||||     |||||||||||||||||||    
T  37568543 atttgctaataaatgcatggtgcatttttcctttctgtgcataggctagtagttggcacttggcagtgcaggaagc-----aataaacacctggtacaag 37568637  T
Q  463 ttttacactaagagcatgaattttggtgtaataggagtgcatggattttcaactctcacggttcattacctctataaatagaggtgtattttggaaggaa 562  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37568638 ttttactctaagagcatgaattttggtgtaaaaggagtgcatggattttcaactctcacggttcattacctctataaatagaggtgtattttggaaggaa 37568737  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 37568113 - 37568172
Alignment:
Q  10 aagaaaatatagtgaggtgtgttgttcttaatgtcgtgagttacactaaactctctccac 69  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37568113 aagaatatatagtgaggtgtgttgttcttaatgtcgtgagttacactaaactctctccac 37568172  T

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Target: chr5 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 495 - 587
Target Start/End: Original strand, 7739657 - 7739750
Alignment:
Q  495 aggagtgcatggattttcaactctcacggttcattacctctataaatagaggtgtattttggaaggaagaaatc-atcataagcaaaacacaac 587  Q
    ||||||||||| ||| ||||||||||||||||||| |||||||||||||| ||| |||||||||||||||| || |||| ||||||||||||||    
T  7739657 aggagtgcatgaattatcaactctcacggttcattgcctctataaatagatgtgcattttggaaggaagaagtcaatcagaagcaaaacacaac 7739750  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 484 - 565
Target Start/End: Original strand, 19940793 - 19940872
Alignment:
Q  484 tttggtgtaataggagtgcatggattttcaactctcacggttcattacctctataaatagaggtgtattttggaaggaagaa 565  Q
    |||||||| | |||| ||||| | ||| ||||| |||||||||| ||| |||||||||||||||| ||||  ||||||||||    
T  19940793 tttggtgtgaaaggattgcatagctttgcaactttcacggttcactacatctataaatagaggtgcattt--gaaggaagaa 19940872  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 484 - 565
Target Start/End: Original strand, 19945547 - 19945626
Alignment:
Q  484 tttggtgtaataggagtgcatggattttcaactctcacggttcattacctctataaatagaggtgtattttggaaggaagaa 565  Q
    |||||||| | |||| ||||| | ||| ||||| |||||||||| ||| |||||||||||||||| ||||  ||||||||||    
T  19945547 tttggtgtgaaaggattgcatagctttgcaactttcacggttcactacatctataaatagaggtgcattt--gaaggaagaa 19945626  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 642
Target Start/End: Original strand, 26199567 - 26199730
Alignment:
Q  484 tttggtgtaataggagtgcatggattttcaactctcacggttcattacctctataaatagaggtgtattttggaaggaagaaatcatcataagcaaaa-- 581  Q
    |||||||| | |||| ||||| | ||| ||||| |||||||||| ||| |||||||||||||||| ||||  |||||||| || ||||| ||||||||      
T  26199567 tttggtgtgaaaggattgcatagctttgcaactttcacggttcactacatctataaatagaggtgcattt--gaaggaag-aagcatcagaagcaaaaac 26199663  T
Q  582 --cacaacaca----agtcaattacatcaaaaaagagttagagaaaatctcagcgagagaattttag 642  Q
       ||||||||    ||| ||||||||||| | ||||| |||||||| ||||| | |||||||||||    
T  26199664 acaacaacacaagtgagtgaattacatcaatagagagtaagagaaaaactcagtgtgagaattttag 26199730  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 484 - 565
Target Start/End: Original strand, 6693597 - 6693676
Alignment:
Q  484 tttggtgtaataggagtgcatggattttcaactctcacggttcattacctctataaatagaggtgtattttggaaggaagaa 565  Q
    |||||||| | |||| ||||| | ||| ||||| |||||||||| ||| |||||||||||||||| ||||  ||||||||||    
T  6693597 tttggtgtgagaggattgcatagctttgcaactttcacggttcactacatctataaatagaggtgcattt--gaaggaagaa 6693676  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 484 - 565
Target Start/End: Complemental strand, 795224 - 795145
Alignment:
Q  484 tttggtgtaataggagtgcatggattttcaactctcacggttcattacctctataaatagaggtgtattttggaaggaagaa 565  Q
    |||||||| | |||| ||||| | ||| ||||| |||||||||| ||| |||||||||||||||| ||||  ||||||||||    
T  795224 tttggtgtgaaaggattgcatagctttgcaactttcacggttcactacatctataaatagaggtgcattt--gaaggaagaa 795145  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 484 - 565
Target Start/End: Complemental strand, 799979 - 799900
Alignment:
Q  484 tttggtgtaataggagtgcatggattttcaactctcacggttcattacctctataaatagaggtgtattttggaaggaagaa 565  Q
    |||||||| | |||| ||||| | ||| ||||| |||||||||| ||| |||||||||||||||| ||||  ||||||||||    
T  799979 tttggtgtgaaaggattgcatagctttgcaactttcacggttcactacatctataaatagaggtgcattt--gaaggaagaa 799900  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 484 - 565
Target Start/End: Original strand, 8269849 - 8269928
Alignment:
Q  484 tttggtgtaataggagtgcatggattttcaactctcacggttcattacctctataaatagaggtgtattttggaaggaagaa 565  Q
    |||||||| | |||| ||||| | ||| ||||| |||||||||| ||| |||||||||||||||| ||||  ||||||||||    
T  8269849 tttggtgtgaaaggattgcatagctttgcaactttcacggttcactacatctataaatagaggtgcattt--gaaggaagaa 8269928  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 484 - 565
Target Start/End: Original strand, 8274564 - 8274643
Alignment:
Q  484 tttggtgtaataggagtgcatggattttcaactctcacggttcattacctctataaatagaggtgtattttggaaggaagaa 565  Q
    |||||||| | |||| ||||| | ||| ||||| |||||||||| ||| |||||||||||||||| ||||  ||||||||||    
T  8274564 tttggtgtgaaaggattgcatagctttgcaactttcacggttcactacatctataaatagaggtgcattt--gaaggaagaa 8274643  T

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