View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19440_low_3 (Length: 562)
Name: NF19440_low_3
Description: NF19440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19440_low_3 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 558; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Complemental strand, 40201455 - 40200894
Alignment:
| Q |
1 |
aatgcataaaggggttggcagtaaacttggtatgaacctataaggtggataactatggcagcattggctatgtcaaggagccaaaatgggttatagaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40201455 |
aatgcataaaggggttggcagtaaacttggtatgaacctataaggtggataactatggcagcattggctatgtcaaggagccaaaatgggttatagaaac |
40201356 |
T |
|
| Q |
101 |
caaaaccggttaaaaggtttccaggacttgaatttccaaacgcggcatatccaaaacagccgcaaagcatgtagaaaattgttgtcgctgcaacgctgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40201355 |
caaaaccggttaaaaggtttccaggacttgaatttccaaacgcggcatatccaaaacagccgcaaagcatgtagaaaattgttgtcgctgcaacgctgat |
40201256 |
T |
|
| Q |
201 |
aattgtagccttcttcattgtttttgcctcagatggtggtgcttttaccgtgtcctaattcataatataatgtaatttttaaattttgattgagcttagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40201255 |
aattgtagccttcttcattgtttttgcctcagatggtggtgcttttaccgtgtcctaattcataatataatgtaatttttaaattttgattgagcttagc |
40201156 |
T |
|
| Q |
301 |
tcaacgcgtataaaactaatttatgaggtgataaatgtcattcattataaatttgttcaaaccttctctatattcaatacgggacttggattttatgttt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40201155 |
tcaacgcgtataaaactaatttatgaggtgataaatgtcattcattataaatttgttcaaaccttctctattttcaatacgggacttggattttatgttt |
40201056 |
T |
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| Q |
401 |
gttggaaatatttttattaagttatggaacaaaacatgtcctataaaaaagataaacaagaaaatgaattaatacctgaatttctataaggatcatggag |
500 |
Q |
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| T |
40201055 |
gttggaaatatttttattaagttatggaacaaaacatgtcctataaaaaagataaacaagaaaatgaattaatacctgaatttctataaggatcatggag |
40200956 |
T |
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| Q |
501 |
tatgcgtatgcaaaagctatgtcaccaagagcttgcaaactcccccaaactttctgagcttt |
562 |
Q |
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| T |
40200955 |
tatgcgtatgcaaaagctatgtcaccaagagcttgcaaactcccccaaactttctgagcttt |
40200894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Complemental strand, 40205047 - 40204482
Alignment:
| Q |
1 |
aatgcataaaggggttggcagtaaacttggtatgaacctataaggtggataactatggcagcattggctatgtcaaggagccaaaatgggttatagaaac |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||| | ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40205047 |
aatgcataaaggggttggcagtagacttggtacgcaccaatgaggtggataactatggcagcattggctatgtcaaggagccaaaatgggttatagaaac |
40204948 |
T |
|
| Q |
101 |
caaaaccggttaaaaggtttccaggacttgaatttccaaacgcggcatatccaaaacagccgcaaagcatgtagaaaattgttgtcgctgcaacgctgat |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
40204947 |
caaaaccggttaaaaggtttccaggacttgaatttccaaacgcagcatatccaaaacagccgcaaagcatgtagaaaaatgttgtcgatgcaacgctgat |
40204848 |
T |
|
| Q |
201 |
aattgtagccttcttcattgtttttgcctca---gatggtggtgcttttaccgtgtcctaattcataat-ataatgtaatttttaaattttgattgagct |
296 |
Q |
| |
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|||||||||||||||||||| ||||||||| | ||||||||||| |||||||||| ||||||||| ||||| ||||||||||| |||||||||||| |
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| T |
40204847 |
gattgtagccttcttcattgtctttgcctcagtcggaggtggtgctttaaccgtgtcctgattcataataataatataatttttaaactttgattgagct |
40204748 |
T |
|
| Q |
297 |
tagctcaacgcgtataaaactaatttatgaggtgataaatgtcattcattata--aatttgttcaaaccttctctatattcaatacgggacttggatttt |
394 |
Q |
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|| |||| | | || |||||||| |||| |||||||||| ||||||| ||||| ||| |||||||||| ||||| ||||||| |||||||| ||||| |
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| T |
40204747 |
taactcagc-cctagaaaactaacttataaggtgataaa-gtcattcgttatatttcttttttcaaaccttgtctattttcaatatgggacttgaatttt |
40204650 |
T |
|
| Q |
395 |
atgtttgttggaaatatttttattaagttatggaacaaaacatgtcctataaaaaagataaacaagaaaatgaattaatacctgaatttctataaggatc |
494 |
Q |
| |
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||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
40204649 |
atgactgttggaaatatttttataaagttatggaacaaaacaagtcttataaaaaagaaatacaagaaaatgaattaatacctgaatttctataaggatc |
40204550 |
T |
|
| Q |
495 |
atggagtatgcgtatgcaaaagctatgtcaccaagagcttgcaaactcccccaaactttctgagcttt |
562 |
Q |
| |
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|||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40204549 |
atggagtatgaatatgcaaaggctatgtcaccaagagcttgaaaactcccccaaactttctgagcttt |
40204482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Complemental strand, 40209093 - 40208528
Alignment:
| Q |
1 |
aatgcataaaggggttggcagtaaacttggtatgaacctataaggtggataactatggcagcattggctatgtcaaggagccaaaatgggttatagaaac |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40209093 |
aatgcataaaggggttggcagtagacttggtatgcaccaatgaggtggataactatggcaacattggctatgtcaaggagccaaaatgggttatagaaac |
40208994 |
T |
|
| Q |
101 |
caaaaccggttaaaaggtttccaggacttgaatttccaaacgcggcatatccaaaacagccgcaaagcatgtagaaaattgttgtcgctgcaacgctgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || || |||||||||||||| |||||||||||||||| || |||||||||||||| ||| |
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| T |
40208993 |
caaaaccggttaaaaggtttccaggacttgaatttccaaatgccgcgtatccaaaacagccacaaagcatgtagaaaaatgctgtcgctgcaacgccgat |
40208894 |
T |
|
| Q |
201 |
aattgtagccttcttcattgtttttgcctcaga---tggtggtgcttttaccgtgtcctaattcataatataatgtaatttttaaattttgattgagctt |
297 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| | || | |||||||||||||||||||||| |
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| T |
40208893 |
gattgtagccttcttcattgtttttgcctcagacggaggtggtgcttttaccgtgtcctgattcataacaacat-aattttttaaattttgattgagctt |
40208795 |
T |
|
| Q |
298 |
agctcaacgcgtataaaactaatttatgaggtgataaatgtcattcattataaat-ttgttcaaaccttctctatatt-caatacgggacttggatttta |
395 |
Q |
| |
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| |||||| | ||||||||||| |||| || ||||||| |||||||||||| | || ||||| |||| ||| | || |||||| |||||||||||||| |
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| T |
40208794 |
aactcaac-cctataaaactaacttataagaagataaatatcattcattatacttatttttcaagccttttcttttttacaatacaggacttggatttta |
40208696 |
T |
|
| Q |
396 |
tgtttgttggaaatatttttattaagttatggaacaaaacatgtcctataaaaaagataa-acaagaaaatgaattaatacctgaatttctataaggatc |
494 |
Q |
| |
|
|| ||||||||||||||||||| | ||| |||||||||||| ||| ||||| ||||| || | | ||||||||| ||||||||||||||||||||||||| |
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| T |
40208695 |
tgcttgttggaaatatttttataatgttgtggaacaaaacaagtcttataacaaagaaaatataggaaaatgaactaatacctgaatttctataaggatc |
40208596 |
T |
|
| Q |
495 |
atggagtatgcgtatgcaaaagctatgtcaccaagagcttgcaaactcccccaaactttctgagcttt |
562 |
Q |
| |
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|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40208595 |
atggagtatgagtatgcaaaggctatgtcaccaagagcttgcaaactcccccaaactttctgagcttt |
40208528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 42 - 224
Target Start/End: Original strand, 10298590 - 10298772
Alignment:
| Q |
42 |
aaggtggataactatggcagcattggctatgtcaaggagccaaaatgggttatagaaaccaaaaccggttaaaaggtttccaggacttgaatttccaaac |
141 |
Q |
| |
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|||||||||||| || || ||||||||||| || |||||||| || || ||||||||||| |||||||||| |||||||||||||||||| | |||||| |
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| T |
10298590 |
aaggtggataacaattgcggcattggctatatcgaggagccagaaaggattatagaaaccgaaaccggttagaaggtttccaggacttgagtctccaaaa |
10298689 |
T |
|
| Q |
142 |
gcggcatatccaaaacagccgcaaagcatgtagaaaattgttgtcgctgcaacgctgataattgtagccttcttcattgtttt |
224 |
Q |
| |
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|| || ||||| ||||| || || | |||||||||||| ||||| || ||| ||||| | |||||||| ||||||||||| |
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| T |
10298690 |
gctgcgtatccgaaacaaccacacatcatgtagaaaatggttgttactataacactgattaaggtagcctttttcattgtttt |
10298772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 475 - 553
Target Start/End: Original strand, 10298802 - 10298880
Alignment:
| Q |
475 |
cctgaatttctataaggatcatggagtatgcgtatgcaaaagctatgtcaccaagagcttgcaaactcccccaaacttt |
553 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||| ||||| ||||||| |||||||||||| ||||||| ||||||||| |
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| T |
10298802 |
cctgaatttctataaggatcattgagtaggagtaggcaaaggctatgttaccaagagcttggaaactcctccaaacttt |
10298880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 10294987 - 10295105
Alignment:
| Q |
67 |
gctatgtcaaggagccaaaatgggttatagaaaccaaaaccggttaaaaggtttccaggacttgaatttccaaacgcggcatatccaaaacagccgcaaa |
166 |
Q |
| |
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||||| || ||||||||| | |||||||||||||||||| |||||| ||||||| | || ||||| | |||||| | || ||||||||||| ||| | | |
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| T |
10294987 |
gctatatctaggagccaagaagggttatagaaaccaaaaacggttagaaggtttacggggcttgagtctccaaaagttgcgtatccaaaacaaccgtaca |
10295086 |
T |
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| Q |
167 |
gcatgtagaaaattgttgt |
185 |
Q |
| |
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|||||||||||| ||||| |
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| T |
10295087 |
tcatgtagaaaatggttgt |
10295105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 27876080 - 27876019
Alignment:
| Q |
64 |
ttggctatgtcaaggagccaaaatgggttatagaaaccaaaaccggttaaaaggtttccagg |
125 |
Q |
| |
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||||| |||||||| |||||| | ||||||||||| |||||||| || ||||| |||||||| |
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| T |
27876080 |
ttggcaatgtcaagaagccaataggggttatagaatccaaaaccagtcaaaagatttccagg |
27876019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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