View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19440_low_6 (Length: 394)
Name: NF19440_low_6
Description: NF19440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19440_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 25996478 - 25996853
Alignment:
| Q |
1 |
tttatatagctgcaagtgtcacaagacataccgaatatatatgtcctgttattatcttaaacaacaagaacccattaatgcatggatccataaataaaca |
100 |
Q |
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| T |
25996478 |
tttatatagctgcaagtgtcacaagacataccgaatatatatgtcctattattatcttaaacaacaagaacccattaatgcatggatccataaataaaca |
25996577 |
T |
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| Q |
101 |
aatatatcacaacacacacataagaaaaatatgtgttctccaaccttaacaaacaagaccaaataccataattcttcaaatgttaggatgtttaatgatt |
200 |
Q |
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| T |
25996578 |
aatatatcacaacacacacataagaaaaatatgtgttctccaaccttaacaaacaagaccaaataccataattcttcaaatgttaggatgcttaatgatt |
25996677 |
T |
|
| Q |
201 |
ctttgcagaacaacagtcctagccctcctaatgtcacggctacagttatcagcttgaactcctaaatcttcaacattcttcataaacacaccaagtttct |
300 |
Q |
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| T |
25996678 |
ctttgcagaacaacagtcctagctctcctaatgtcacggctacagttatcagcttgaactcctaaatcttcaacattcttcataaacacaccaagtttct |
25996777 |
T |
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| Q |
301 |
tcttaatatcctctatagcaatcttcacagcttcttcttcaattgcaaaatcaacagtatgaaacaaagattcaac |
376 |
Q |
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| T |
25996778 |
tcttaatatcctctatagcaatcttcacagcttcttcttcaattgcaaaatcaacagtatgaagcaaagattcaac |
25996853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 231 - 340
Target Start/End: Original strand, 12557652 - 12557761
Alignment:
| Q |
231 |
atgtcacggctacagttatcagcttgaactcctaaatcttcaacattcttcataaacacaccaagtttcttcttaatatcctctatagcaatcttcacag |
330 |
Q |
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|||||||||||||| |||||||||| ||||||||||||| |||||||||||||| || || | |||||||| || || ||||| |||| |||||| | |
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| T |
12557652 |
atgtcacggctacatgtatcagcttgtgctcctaaatcttcgacattcttcataaaaactcccaacttcttcttgatttcttctattgcaaccttcactg |
12557751 |
T |
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| Q |
331 |
cttcttcttc |
340 |
Q |
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|| ||||||| |
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| T |
12557752 |
ctccttcttc |
12557761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 24361108 - 24361161
Alignment:
| Q |
49 |
ttattatcttaaacaacaagaacccattaatgcatggatccataaataaacaaata |
104 |
Q |
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| T |
24361108 |
ttattatcttaaa--acaagaaccaatttaagcatggatccataaataaacaaata |
24361161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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