View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19440_low_7 (Length: 383)
Name: NF19440_low_7
Description: NF19440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19440_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 50423216 - 50423450
Alignment:
| Q |
1 |
cactaaaaggaacatatgcaaaaatttaaaatgtacaaatacaagaaacaatgtattgcaacgtgcaacgacgtattattattagtgtttatctataccg |
100 |
Q |
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| T |
50423216 |
cactaaaaggaacatatgcaaaaatttaaaatgtacaaatacaagaaacaatgtattgcaacgtgcaatgacgtattattattagtgtttatctataccg |
50423315 |
T |
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| Q |
101 |
tgacaattataattattgaatgttatgtgaaatgtgtatttgattgtgtgatcttgtgaaattatcatgaatagaacttattgtgccttagtttagactt |
200 |
Q |
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| T |
50423316 |
tgacaattataattattgaatgttatgtgaaatgtgtatttgattgtgtgatcttgtgaaattatcgtgaatagaacttattgtgccttagtttagactt |
50423415 |
T |
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| Q |
201 |
aagagtggagtttgtggaggaggtgaaggtaatct |
235 |
Q |
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| T |
50423416 |
aagagtggagtttgtggaggaggccaaggtaatct |
50423450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 264 - 366
Target Start/End: Original strand, 50423508 - 50423610
Alignment:
| Q |
264 |
gttggtgtccccgtcaagttctggtgccttaatctgctgctgtttggtggtcaggctcgtcccagccgtgctgttattctgctgacagcgctgatgtgct |
363 |
Q |
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| T |
50423508 |
gttggtgtccccgtcaagttctggtgcgttaatctgctgctgtttggtggtcaggctcgtcccagccgtgctgttattctgctgacagcgctgatgtgct |
50423607 |
T |
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| Q |
364 |
gct |
366 |
Q |
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||| |
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| T |
50423608 |
gct |
50423610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 165
Target Start/End: Original strand, 14425772 - 14425825
Alignment:
| Q |
114 |
tattgaatgttatgtgaa--atgtgtatttgattgtgtgatcttgtgaaattat |
165 |
Q |
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| T |
14425772 |
tattgaatattatgtgaagtatatgtatttaattgtgtgatcttgtgaaattat |
14425825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 366
Target Start/End: Complemental strand, 4636616 - 4636571
Alignment:
| Q |
321 |
cgtcccagccgtgctgttattctgctgacagcgctgatgtgctgct |
366 |
Q |
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| T |
4636616 |
cgtcccagctgtgctggtcttctgctggcagcgctgatgtgctgct |
4636571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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