View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19440_low_9 (Length: 342)

Name: NF19440_low_9
Description: NF19440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19440_low_9
NF19440_low_9
[»] scaffold1064 (1 HSPs)
scaffold1064 (2-164)||(2416-2578)
[»] chr4 (5 HSPs)
chr4 (1-137)||(9238487-9238624)
chr4 (3-164)||(5706756-5706917)
chr4 (135-212)||(9238771-9238848)
chr4 (6-164)||(9880874-9881033)
chr4 (3-196)||(26904888-26905076)
[»] chr8 (1 HSPs)
chr8 (3-163)||(37787009-37787169)
[»] chr7 (2 HSPs)
chr7 (15-165)||(296659-296809)
chr7 (15-177)||(30380226-30380388)
[»] chr2 (3 HSPs)
chr2 (3-181)||(38099545-38099723)
chr2 (15-163)||(301926-302074)
chr2 (22-181)||(3461355-3461514)
[»] chr5 (1 HSPs)
chr5 (6-157)||(14233709-14233860)
[»] chr3 (2 HSPs)
chr3 (3-164)||(18641356-18641517)
chr3 (51-164)||(34982935-34983048)
[»] chr6 (2 HSPs)
chr6 (87-181)||(29011197-29011291)
chr6 (3-163)||(28248748-28248908)
[»] scaffold0038 (1 HSPs)
scaffold0038 (3-163)||(48910-49070)
[»] chr1 (2 HSPs)
chr1 (15-89)||(50778524-50778598)
chr1 (129-185)||(44536443-44536499)


Alignment Details
Target: scaffold1064 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 2 - 164
Target Start/End: Original strand, 2416 - 2578
Alignment:
Q  2 atgtttgcttctaccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagc 101  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2416 atgtttgcttctaccatgagagatgggattcttgacaaggcttatggctgacttgttgtcaattctcaatgttagaggcttcatcacttcacacttaagc 2515  T
Q  102 tctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactca 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2516 tctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactca 2578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 9e-58; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 9238487 - 9238624
Alignment:
Q  1 tatgtttgcttctaccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgtt-agaggcttcatcacttcacacttaa 99  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9238487 tatgtttgcttctaccatgagagatgggattcttgacaagacttatggctgacttgttgtcaattctcagtgttaagaggcttcatcacttcacacttaa 9238586  T
Q  100 gctctttcattgctgaatccaaccacaaagcttgacat 137  Q
     ||||||||||| |||||||||||||||||||||||||    
T  9238587 tctctttcattgatgaatccaaccacaaagcttgacat 9238624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 5706917 - 5706756
Alignment:
Q  3 tgtttgcttctaccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagct 102  Q
    ||||| ||||| ||||||||||  ||| |||| ||||| ||||||| ||| |||||||||||  ||||||| |||||||| |||||||||||||| ||||    
T  5706917 tgtttacttctgccatgagagacaggactcttagcaagacttatggatgatttgttgtcaatcttcagtgtcagaggctttatcacttcacacttgagct 5706818  T
Q  103 ctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactca 164  Q
    |||||||  ||||||||| ||| || |||||||| ||||||||||| |||| ||||||||||    
T  5706817 ctttcatcactgaatccagccataatgcttgacaagtagcaaatgttcctgtaatgtactca 5706756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 9238771 - 9238848
Alignment:
Q  135 catgtagcaaatgtacctgcaatgtactcagatttacatgatgagagcgcaataacaggttggctttttgtaagtttg 212  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9238771 catgtagcaaatgtacctgcaatgtactcagattcacatgatgagagcgcaataacaggttggctttttgtaagtttg 9238848  T

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Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 6 - 164
Target Start/End: Complemental strand, 9881033 - 9880874
Alignment:
Q  6 ttgcttctaccatgagagatgggattcttggcaaggcttatggctgactt-gttgtcaattctcagtgttagaggcttcatcacttcacacttaagctct 104  Q
    |||||||||||||| |||||||||||||| ||||| |||||||  || || |||||||||| | || |||||||||||||  | |||||| |||||||||    
T  9881033 ttgcttctaccatgtgagatgggattcttagcaagacttatggtagattttgttgtcaattatgagggttagaggcttcacaatttcacatttaagctct 9880934  T
Q  105 ttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactca 164  Q
    |||||  ||||||| |||||||||| |||||| |||| |||||| ||| |||| ||||||    
T  9880933 ttcatcactgaatctaaccacaaagtttgacaagtagaaaatgttcctacaatatactca 9880874  T

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Target: chr4; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 3 - 196
Target Start/End: Complemental strand, 26905076 - 26904888
Alignment:
Q  3 tgtttgcttctaccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagct 102  Q
    ||||||||| |||||||||| || || ||||| ||||| ||||||||||| |||||||||||  ||||||||||||| ||||    ||| ||||| | ||    
T  26905076 tgtttgcttataccatgagaaatagggttcttagcaagacttatggctgatttgttgtcaatcttcagtgttagaggtttca----ttcgcacttgatct 26904981  T
Q  103 ctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactcagatttacatgatgagagcgcaataacaggttg 196  Q
    |||||||  ||||||||||||| |  |||||||||||| ||||| ||| |||||| ||||||  || ||| ||||| || ||| ||||||||||    
T  26904980 ctttcatcactgaatccaacca-atggcttgacatgtatcaaatatacttgcaatttactcaacttcacaggatgaaagtgcactaacaggttg 26904888  T

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Target: chr8 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 37787009 - 37787169
Alignment:
Q  3 tgtttgcttctaccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagct 102  Q
    ||||| ||||| ||||| ||||| |||||||| ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |    
T  37787009 tgtttacttctgccatgtgagattggattctttgcaagacttatggctgatttgttgtcaattttcagtgttagaggcttcatcacttcacacttaagtt 37787108  T
Q  103 ctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactc 163  Q
    | |||||  |||||| || ||| || |||||||| ||||||||||| ||||||||||||||    
T  37787109 ccttcatcactgaattcagccataatgcttgacaagtagcaaatgttcctgcaatgtactc 37787169  T

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Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 296809 - 296659
Alignment:
Q  15 ccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagctctttcattgctg 114  Q
    |||||||||| ||||||||| ||||| ||||||||||| |||||||||||  ||||||| ||||||||||||||||||||||| |||||||| ||  |||    
T  296809 ccatgagagacgggattcttagcaagacttatggctgatttgttgtcaatcttcagtgtcagaggcttcatcacttcacacttgagctcttttatcactg 296710  T
Q  115 aatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactcag 165  Q
    |||||| ||| |  |||||| | ||||||||||| ||||||||||||||||    
T  296709 aatccagccatagtgcttgaaaagtagcaaatgttcctgcaatgtactcag 296659  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 177
Target Start/End: Complemental strand, 30380388 - 30380226
Alignment:
Q  15 ccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagctctttcattgctg 114  Q
    ||||| ||||| |||||||  ||||| ||||||||||| |||||||||||   |||||||||||| ||||||||||||||||| |||||||||||  |||    
T  30380388 ccatgtgagattggattctaagcaagacttatggctgatttgttgtcaatctccagtgttagaggtttcatcacttcacacttgagctctttcatcactg 30380289  T
Q  115 aatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactcagatttacatgatg 177  Q
    ||||||| || | ||||||||| |||||||| || ||| ||||||| |||  || ||||||||    
T  30380288 aatccaatcatagagcttgacaagtagcaaaagttccttcaatgtattcaacttcacatgatg 30380226  T

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Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 3 - 181
Target Start/End: Original strand, 38099545 - 38099723
Alignment:
Q  3 tgtttgcttctaccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagct 102  Q
    |||||| ||||||||||||| || |||||| | ||||| ||||||| ||| |||||||||||  ||||||||||||| ||||||||||||||||| ||||    
T  38099545 tgtttgattctaccatgagaaataggattcctagcaagacttatggttgatttgttgtcaatcttcagtgttagaggtttcatcacttcacacttgagct 38099644  T
Q  103 ctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactcagatttacatgatgagag 181  Q
    |||||||   |||||||| | ||| |||||||||| | ||||||| ||||||||||||||||  || |||| |||||||    
T  38099645 ctttcatcattgaatccagcaacagagcttgacatattgcaaatgcacctgcaatgtactcaacttcacataatgagag 38099723  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 163
Target Start/End: Complemental strand, 302074 - 301926
Alignment:
Q  15 ccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagctctttcattgctg 114  Q
    ||||| |||||  ||||||| ||||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||| || |||||  |||    
T  302074 ccatgtgagattagattctttgcaagacttgtggctgatttgttgtcaattttcagtgttagaggcttcatcacttcacacttaagttccttcatcactg 301975  T
Q  115 aatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactc 163  Q
    ||| || ||| || |||||||| ||||||||||| ||||||||||||||    
T  301974 aattcagccataatgcttgacaagtagcaaatgttcctgcaatgtactc 301926  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 181
Target Start/End: Complemental strand, 3461514 - 3461355
Alignment:
Q  22 agatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaa 121  Q
    |||| ||||||||  |||| ||||||||||| || || |||||| |||||||||||||||||||||||||||||||||  || |||||  ||||||||||    
T  3461514 agattggattctttacaagacttatggctgatttattatcaattttcagtgttagaggcttcatcacttcacacttaaattccttcatcactgaatccaa 3461415  T
Q  122 ccacaaagcttgacatgtagcaaatgtacctgcaatgtactcagatttacatgatgagag 181  Q
    ||| |  |||||||| |||||||| ||||| |  ||||||||   || ||||||||||||    
T  3461414 ccatagtgcttgacaagtagcaaaagtaccagttatgtactcttcttcacatgatgagag 3461355  T

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Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 6 - 157
Target Start/End: Complemental strand, 14233860 - 14233709
Alignment:
Q  6 ttgcttctaccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagctctt 105  Q
    |||||||||||||| ||||| |||||||| |||||||||||||  || |||||||||||||| || |||||||||||||  |||||||| |||||||| |    
T  14233860 ttgcttctaccatgtgagataggattcttagcaaggcttatggaagatttgttgtcaattctgagggttagaggcttcactacttcacatttaagctcct 14233761  T
Q  106 tcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaat 157  Q
    ||||  ||||||| ||||||| ||||||||| ||||||||||| | ||||||    
T  14233760 tcatcactgaatctaaccacatagcttgacaagtagcaaatgttcttgcaat 14233709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 18641356 - 18641517
Alignment:
Q  3 tgtttgcttctaccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagct 102  Q
    ||||| ||||| ||||||||||  ||| |||| ||||| ||||||| ||| |||||||||||  ||||||| |||||||| |||||||||||||| ||||    
T  18641356 tgtttacttctgccatgagagacaggactcttagcaagacttatggatgatttgttgtcaatcttcagtgtcagaggctttatcacttcacacttgagct 18641455  T
Q  103 ctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactca 164  Q
    |||||||  ||||||||| ||| || |||||||| ||||||||||| |||| ||||||||||    
T  18641456 ctttcatcactgaatccagccataatgcttgacaagtagcaaatgttcctgtaatgtactca 18641517  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 51 - 164
Target Start/End: Complemental strand, 34983048 - 34982935
Alignment:
Q  51 gacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtac 150  Q
    ||||| ||||||||  || ||||||||||||||| |||||||||||| ||||||||||| ||| | |||||||| ||| ||||||| ||||||||||| |    
T  34983048 gacttattgtcaatcatctgtgttagaggcttcaccacttcacacttgagctctttcatcgctaattccaaccataaaacttgacaagtagcaaatgttc 34982949  T
Q  151 ctgcaatgtactca 164  Q
     |||||| ||||||    
T  34982948 atgcaatatactca 34982935  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 87 - 181
Target Start/End: Original strand, 29011197 - 29011291
Alignment:
Q  87 acttcacacttaagctctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactcagatttacatgatgagag 181  Q
    ||||||||||| || || |||||  ||||||||||||||||||||||||||||||||||| | |||||||| ||||||| || ||| ||||||||    
T  29011197 acttcacacttgagttcattcatcactgaatccaaccacaaagcttgacatgtagcaaatattcctgcaatatactcagcttcacaagatgagag 29011291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 163
Target Start/End: Complemental strand, 28248908 - 28248748
Alignment:
Q  3 tgtttgcttctaccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagct 102  Q
    ||||| ||||| ||||||||||    |||||| ||||| |||||| |||| |||||||||||  ||||||| |||||||| | |||||||||||| ||||    
T  28248908 tgtttacttctgccatgagagacaatattcttagcaagacttatgcctgatttgttgtcaatcttcagtgtcagaggctttaccacttcacacttgagct 28248809  T
Q  103 ctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactc 163  Q
    |||||||  || |||||| ||| || | ||| || |||||||| || || || ||||||||    
T  28248808 ctttcatcactaaatccagccataatgtttggcaagtagcaaaagttccagctatgtactc 28248748  T

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Target: scaffold0038 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 163
Target Start/End: Complemental strand, 49070 - 48910
Alignment:
Q  3 tgtttgcttctaccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcacttcacacttaagct 102  Q
    ||||| ||||| ||||||||||    |||||| ||||| |||||| |||| |||||||||||  ||||||| |||||||| | |||||||||||| ||||    
T  49070 tgtttacttctgccatgagagacaatattcttagcaagacttatgcctgatttgttgtcaatcttcagtgtcagaggctttaccacttcacacttgagct 48971  T
Q  103 ctttcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaatgtactc 163  Q
    |||||||  || |||||| ||| || | ||| || |||||||| || || || ||||||||    
T  48970 ctttcatcactaaatccagccataatgtttggcaagtagcaaaagttccagctatgtactc 48910  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 50778524 - 50778598
Alignment:
Q  15 ccatgagagatgggattcttggcaaggcttatggctgacttgttgtcaattctcagtgttagaggcttcatcact 89  Q
    ||||| ||||| |||||||| ||||| ||||||||||| || || |||||| |||||||||||||||||||||||    
T  50778524 ccatgtgagattggattctttgcaagacttatggctgatttattatcaattttcagtgttagaggcttcatcact 50778598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 44536443 - 44536499
Alignment:
Q  129 gcttgacatgtagcaaatgtacctgcaatgtactcagatttacatgatgagagcgca 185  Q
    |||||||| |||||||||||  ||||||||||||| | |||||  ||||||||||||    
T  44536443 gcttgacaagtagcaaatgtttctgcaatgtactctggtttactggatgagagcgca 44536499  T

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