View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19441_high_3 (Length: 527)
Name: NF19441_high_3
Description: NF19441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19441_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 286
Target Start/End: Original strand, 44576588 - 44576863
Alignment:
| Q |
11 |
gaagaagaaaatgaaaataaagagttagatataaaataatttcttaaattaccagaagtgatgcaatacaaccatataggagggtccggaacctgccaag |
110 |
Q |
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| T |
44576588 |
gaagaagaaaatgaaaataaagagttagatataaaataatttcttaaattaccagaagtgatgcaatacaaccatataggagggtccggaacctcccaag |
44576687 |
T |
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| Q |
111 |
ataagtatcagaaatgaaagcaccaaataatgatgcaatgtttgacgatccattccaaatttgcaccacattaaccacaaatatcccactcatgttgtaa |
210 |
Q |
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| T |
44576688 |
ataagtatcagaaatgaaagcaccaactaatgatgcaatgtttgacgatccattccaaatttgcaccacattaaccacaaatatcccactcatgttgtaa |
44576787 |
T |
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| Q |
211 |
tttgtcagaagatacactgttagatttgatatcaaactcatcgatgccaatttctcaaatgactcattaccttgat |
286 |
Q |
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| T |
44576788 |
tttgtcagaagatacactgttagatttgatatcaaactcatcgatgccaatttctcaaatgactcattaccttgat |
44576863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 326 - 510
Target Start/End: Original strand, 44576890 - 44577074
Alignment:
| Q |
326 |
caatgttaagaaatcttgtatgtttgtaacaacattaatgattataattaattaatgtagaaaacatatataccgatgatatatttaacagatctccatc |
425 |
Q |
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| T |
44576890 |
caatgttaagaaatcttgtgtgtttgtaacaacattaatgattataattaattaatgtagaaaacatatataccgatgatatatttaacagatctccatc |
44576989 |
T |
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| Q |
426 |
ctcctgcttctctggatgaagcttcattagatggtattgcctcatgttctaggtcgagtgtagaaggagaagaatttgtgttcac |
510 |
Q |
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| T |
44576990 |
ctcctgcttctctggatgaagcttcattagatggtatcgcctcatgttctaggtcgagtgtagaaggagaagaatttgtgttcac |
44577074 |
T |
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