View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19441_high_5 (Length: 447)
Name: NF19441_high_5
Description: NF19441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19441_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 48373775 - 48374203
Alignment:
| Q |
1 |
ttttgtcattttaagagtaaatatatcaagtaaaagggtgaaaatttctcagaaataaaaataaaatggtgaggatgagttttcgaaattaactcccggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48373775 |
ttttgtcattttaagagtaaatatatcaagtaaaagggtgaaaatttctcagaaataaaaataaaatggtgaggatgagttttcgaaattaactcccggc |
48373874 |
T |
|
| Q |
101 |
gtggatattttcaaccaaaaattcagaaagttggggtttattaggaaaaacacgggatggtaaaaagtaaataacaacccatcttcaaattttccataca |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48373875 |
gtggatattttcaaccagaaattcagaaagttgaggtttattaggaaaaacacgggatggtaaaaagtaaataacaacccatcttcaaattttccataca |
48373974 |
T |
|
| Q |
201 |
tttgtatagcccaataaaagtaagagttgtacaatttggatgcatcgtaagtattaaaaatgacagttattttttacatcctataagcttcccgtgtaat |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
48373975 |
tttgtatagcctaataaaagtaagagttgtacaatttggatgcatcgtaagtattaaaaaagacagttattttttacatcctataagcttcctgcgtaat |
48374074 |
T |
|
| Q |
301 |
actttctgtttaaaatctataattcgaaataggttgtagttatttttagattgtgtaatctgaaacatagcaaattaaatagaaagtgtgtcataattga |
400 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48374075 |
actttctgtttaaaatctataatttgaaataggttgtagttatttttggattgtgtaatctgaaacatagcaaattaaatagaaagtgtgtcataattga |
48374174 |
T |
|
| Q |
401 |
tatcaaaggtcttggctgaccgtcataca |
429 |
Q |
| |
|
|||||||||||||||||| ||||| |||| |
|
|
| T |
48374175 |
tatcaaaggtcttggctgtccgtcgtaca |
48374203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 413
Target Start/End: Original strand, 36337336 - 36337386
Alignment:
| Q |
363 |
aaacatagcaaattaaatagaaagtgtgtcataattgatatcaaaggtctt |
413 |
Q |
| |
|
||||||| |||| |||||||||||||| || |||||||||||||||||||| |
|
|
| T |
36337336 |
aaacataacaaaataaatagaaagtgtatcgtaattgatatcaaaggtctt |
36337386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 29582082 - 29582124
Alignment:
| Q |
387 |
tgtgtcataattgatatcaaaggtcttggctgaccgtcataca |
429 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||| |||| |
|
|
| T |
29582082 |
tgtgtcatatttgatatcaaaggtctttgctgaccgtcgtaca |
29582124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 413
Target Start/End: Original strand, 27485645 - 27485718
Alignment:
| Q |
341 |
tatttttagattgtgtaatctgaaacatagcaaatta-aatagaaagtgtgtcataattgatatcaaaggtctt |
413 |
Q |
| |
|
|||||||| ||||| ||||||||| || |||||| || || | ||| ||||||||||||||||||||||||||| |
|
|
| T |
27485645 |
tatttttaaattgtataatctgaatcaaagcaaactataaaaaaaattgtgtcataattgatatcaaaggtctt |
27485718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 413
Target Start/End: Original strand, 30452254 - 30452316
Alignment:
| Q |
351 |
ttgtgtaatctgaaacatagcaaattaaatagaaagtgtgtcataattgatatcaaaggtctt |
413 |
Q |
| |
|
|||| ||||||||||||||||| | |||| |||||| ||| | ||||||||||||||| |||| |
|
|
| T |
30452254 |
ttgtataatctgaaacatagcataataaaaagaaagggtggcgtaattgatatcaaagatctt |
30452316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 429
Target Start/End: Original strand, 2033031 - 2033111
Alignment:
| Q |
350 |
attgtgtaatctgaaacatagcaaattaaata-gaaagtgtgtcataattgatatcaaaggtcttggctgaccgtcataca |
429 |
Q |
| |
|
||||| |||||||||||||| |||| |||| | ||||||| ||| ||||||||||||| ||||| | |||||||| |||| |
|
|
| T |
2033031 |
attgtataatctgaaacataacaaaataaaaaagaaagtgagtcgtaattgatatcaagggtctctgttgaccgtcgtaca |
2033111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University