View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19441_low_5 (Length: 481)
Name: NF19441_low_5
Description: NF19441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19441_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 5 - 465
Target Start/End: Original strand, 8148602 - 8149075
Alignment:
| Q |
5 |
ggtagattattcttaacatgtattatgtgcactagcaaagtaaaactgtctacgctgtatcttcatttcttgtgtgcaacttcattggtnnnnnnnnctc |
104 |
Q |
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| T |
8148602 |
ggtagattgttcttaacatgtattatgtgcacaagcaaagtaaagctctctacgctgtatcttcatttcttgtgtgcaacttcattggtaaaaaaaactc |
8148701 |
T |
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| Q |
105 |
aaatatgtttccttgtttgtttaatgtaaaatcattattattcggagcaagatagaagatttaattta-------------ttataaatataaatactgc |
191 |
Q |
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| T |
8148702 |
aaatatgtttccttgtttgtttaatgtaaaaacattattattcggagcaagatagaagatttaatttaatttaatttataattataactataaatactgc |
8148801 |
T |
|
| Q |
192 |
agattctagagttggtgagctaaccaaaaacaaggattggtcacttccatatttggagcaagatagaagggaaagaggattttcatcaaattatgaaagt |
291 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8148802 |
agattctagagttggtgagctaaccaaaaacaaggtttggtcacttccatatttggagcaagatagaagggaaagaggattttcatcaaattatgaaagt |
8148901 |
T |
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| Q |
292 |
ggaaacaaatctgaaggaagaacaaagaaagttgttaggatcaatattgagtgaatggtgtaggacatggtagacattgcctgtaattttgtatgtaaaa |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8148902 |
ggaaacaaatctgaaggaagaacaaagaaagttgttaggatcaatattgagtgaatggtgtaggacatggtagacattgcctgtaattttgtatgtaaaa |
8149001 |
T |
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| Q |
392 |
aatgtagaatgagttgcattgtggtgtggtttagatcaaaaagctataagatcatgttgtagaactaatatatg |
465 |
Q |
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| T |
8149002 |
aatgtagaatgagttgcattgtggtgtggtttagatcaaaaagctataagatcatgttgtagaactaatatatg |
8149075 |
T |
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