View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19442_high_11 (Length: 279)

Name: NF19442_high_11
Description: NF19442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19442_high_11
NF19442_high_11
[»] chr1 (5 HSPs)
chr1 (1-267)||(29453534-29453800)
chr1 (4-266)||(29443554-29443825)
chr1 (1-129)||(29423049-29423177)
chr1 (12-249)||(29468021-29468273)
chr1 (173-266)||(29422941-29423034)
[»] chr2 (40 HSPs)
chr2 (1-266)||(9315647-9315931)
chr2 (143-266)||(11987865-11987989)
chr2 (143-266)||(12012927-12013051)
chr2 (1-260)||(9284420-9284703)
chr2 (88-230)||(10371503-10371644)
chr2 (1-80)||(12012779-12012858)
chr2 (100-251)||(9294990-9295144)
chr2 (130-266)||(9320599-9320736)
chr2 (1-77)||(12019118-12019194)
chr2 (99-266)||(9364245-9364409)
chr2 (88-266)||(10347401-10347571)
chr2 (161-266)||(12019285-12019388)
chr2 (178-266)||(9291566-9291655)
chr2 (5-80)||(9291755-9291830)
chr2 (5-80)||(11987721-11987796)
chr2 (1-80)||(9320815-9320894)
chr2 (130-256)||(9061545-9061675)
chr2 (130-266)||(9328228-9328355)
chr2 (5-77)||(10335692-10335764)
chr2 (214-266)||(12006543-12006595)
chr2 (1-80)||(9061389-9061468)
chr2 (1-80)||(9328432-9328511)
chr2 (181-256)||(9274200-9274276)
chr2 (1-80)||(8573756-8573835)
chr2 (171-258)||(8573934-8574024)
chr2 (1-80)||(10352942-10353021)
chr2 (132-245)||(9272296-9272410)
chr2 (14-80)||(12006361-12006427)
chr2 (210-266)||(10352738-10352794)
chr2 (2-77)||(8579736-8579811)
chr2 (82-266)||(9065937-9066135)
chr2 (1-71)||(10371679-10371749)
chr2 (18-74)||(9364467-9364523)
chr2 (12-80)||(10341182-10341250)
chr2 (5-80)||(10347594-10347672)
chr2 (1-32)||(7115875-7115906)
chr2 (1-80)||(9274333-9274412)
chr2 (89-166)||(10335589-10335665)
chr2 (211-255)||(10341038-10341082)
chr2 (211-266)||(19393258-19393318)
[»] scaffold0667 (2 HSPs)
scaffold0667 (132-266)||(4073-4208)
scaffold0667 (15-77)||(4289-4351)
[»] chr3 (1 HSPs)
chr3 (130-266)||(37462098-37462236)
[»] chr8 (2 HSPs)
chr8 (12-80)||(41966949-41967017)
chr8 (96-266)||(41967066-41967236)
[»] chr4 (1 HSPs)
chr4 (210-265)||(26574525-26574580)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 29453534 - 29453800
Alignment:
Q  1 caagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccccaggaaagagaatcatacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29453534 caagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccccaggaaagagaattatacaa 29453633  T
Q  101 gcaagagaaggtactccttatttattatctgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaacttta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29453634 gcaagagaaggtactccttatttattatctgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaacttta 29453733  T
Q  201 tgttaaaagcaaattgaattcttattatagaacaaggattctctaattactttgaagtctctaccta 267  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29453734 tgttaaaagtaaattgaattcttattatagaacaaggattctctaattactttgaagtctctaccta 29453800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 4 - 266
Target Start/End: Original strand, 29443554 - 29443825
Alignment:
Q  4 gttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccccaggaaagagaatcatacaagca 103  Q
    ||||||| |||||||||||||||||   | ||||| || || |||||||||||||||||||| | |||||| ||||||||||| |||||||| |||||||    
T  29443554 gttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtacaaccttctttccccaggaaggagaatcaaacaagca 29443653  T
Q  104 agagaaggtactccttatttattatctgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgt 203  Q
    |||||||||||| |||||| |||| |||||||||| || ||||||||||||| ||| |||||| || ||||||||||||||||  |||||||||  ||||    
T  29443654 agagaaggtacttcttattgattacctgagttttttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgt 29443753  T
Q  204 taaaag--caaat-------tgaattcttattatagaacaaggattctctaattactttgaagtctctacct 266  Q
    ||||||  |||||       ||||||||||| |||| |||||||||||||||||| ||||||||||||||||    
T  29443754 taaaaggtcaaattgaattctgaattcttatcataggacaaggattctctaattattttgaagtctctacct 29443825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 29423177 - 29423049
Alignment:
Q  1 caagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccccaggaaagagaatcatacaa 100  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||| ||||| |||||||  ||||    
T  29423177 caagttagttgtgttcaaggaattcctaatttcgatcaagccatgatttgtgttggaagtcttgtatcaccttccttccctaggaaggagaatcgcacaa 29423078  T
Q  101 gcaagagaaggtactccttatttattatc 129  Q
    ||||||||||||||| |||||| ||||||    
T  29423077 gcaagagaaggtacttcttattgattatc 29423049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 29468021 - 29468273
Alignment:
Q  12 tgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccccaggaaagagaatcatacaagcaagagaagg 111  Q
    |||||||||||||||||||||  || |||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||  |||||||||||||||    
T  29468021 tgttgaaggaattcctaatttgaatgaagctatgatttgtgttggaagtcttgtaccaccttccttccctaggaacgagaatcgcacaagcaagagaagg 29468120  T
Q  112 tactccttatttattatctgagttttt---------gctctgtataagttaatttca--gttcaatagatccatcatatgatat-----atgcagttaaa 195  Q
    |||| |||||| ||| |||||||||||         | | ||||||||||||| |||  ||| ||| || | ||||||||||||     |||||||||||    
T  29468121 tacttcttattgattgtctgagttttttgagtttttgttatgtataagttaatatcacagtt-aatggacctatcatatgatatgatatatgcagttaaa 29468219  T
Q  196 ctttatgttaaaag--caaattgaattcttattatagaacaaggattctctaatta 249  Q
    || |  ||||||||  ||||||||||||||||||||| |||| |||||||||||||    
T  29468220 ctct--gttaaaaggtcaaattgaattcttattataggacaatgattctctaatta 29468273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 266
Target Start/End: Complemental strand, 29423034 - 29422941
Alignment:
Q  173 atcatatgatatatgcagttaaactttatgttaaaag--caaattgaattcttattatagaacaaggattctctaattactttgaagtctctacct 266  Q
    ||||||||||||||  ||||||||| |  ||||||||  ||||||||||||||||||||  |||| ||||||||||||| ||||||||||||||||    
T  29423034 atcatatgatatatctagttaaactct--gttaaaaggtcaaattgaattcttattatatgacaatgattctctaattattttgaagtctctacct 29422941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 9315931 - 9315647
Alignment:
Q  1 caagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttcccc---------------agga 85  Q
    ||||||| || ||||||||||||| ||||||| ||| |||||||||||||||||| ||||||||| ||||||||||||||                | ||    
T  9315931 caagttatttatgttgaaggaatttctaatttggatgaagctatgatttgtgttgaaagtcttgtaccaccttccttccctgttgattattgtaggaaga 9315832  T
Q  86 aagagaatcatacaagcaaga------gaaggtactccttatttattatctgagtttttgctctgtataagttaatttcagttcaatagatccatcatat 179  Q
    | |||||||||||||||||||      |||||||||   ||| |||||| |||||||||||| ||||||||||||| |||||||||| || |||||||||    
T  9315831 aggagaatcatacaagcaagaacaagagaaggtact---tatatattatttgagtttttgctatgtataagttaatgtcagttcaatggacccatcatat 9315735  T
Q  180 gatatatgcagttaaactttatgttaaaag-caaattgaattcttattatagaacaaggattctctaattactttgaagtctctacct 266  Q
    |||||| | ||||||||| |||| |||| | ||||||||||||||||||||| |||||||||| ||||||||||| || |||||||||    
T  9315734 gatataagtagttaaactctatgctaaaggtcaaattgaattcttattataggacaaggattccctaattactttaaattctctacct 9315647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 143 - 266
Target Start/End: Original strand, 11987865 - 11987989
Alignment:
Q  143 tgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttattatagaacaaggattc 241  Q
    ||||||||||||| ||| |||||| || ||||||| ||||||||| ||||||||||||||||||| | |||||||||||| |||||||| |||||||||     
T  11987865 tgtataagttaatatcaattcaatggacccatcatgtgatatatgtagttaaactttatgttaaaggtcaaattgaattcctattataggacaaggattt 11987964  T
Q  242 tctaattactttgaagtctctacct 266  Q
    |||||||||||||||||||||||||    
T  11987965 tctaattactttgaagtctctacct 11987989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 143 - 266
Target Start/End: Original strand, 12012927 - 12013051
Alignment:
Q  143 tgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttattatagaacaaggattc 241  Q
    ||||||||||||| ||| |||||| || ||||||||||||||||| ||||| |||  |||||||| | ||||||||||||||||||||| ||||||||||    
T  12012927 tgtataagttaatatcaattcaatggacccatcatatgatatatgtagttagactccatgttaaaggtcaaattgaattcttattataggacaaggattc 12013026  T
Q  242 tctaattactttgaagtctctacct 266  Q
    |||||||||||||||||||||||||    
T  12013027 tctaattactttgaagtctctacct 12013051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 9284420 - 9284703
Alignment:
Q  1 caagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc---------------cagga 85  Q
    ||||||| || ||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||                | ||    
T  9284420 caagttatttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttgtgccaccttccttccctgttgataattctagtaaga 9284519  T
Q  86 aagagaatcatacaagcaaga------gaaggtac-tccttatttattatctgag-tttttgctctgtataagttaatttcagttcaatagatccatcat 177  Q
    | ||||||| |  ||||||||      |||||||| || ||||| |||||||||| |||||||| ||||||||||||||| |||| ||| || |||||||    
T  9284520 aggagaatcgtttaagcaagagcaagagaaggtacttctttattgattatctgagttttttgctttgtataagttaattttagtttaatggacccatcat 9284619  T
Q  178 atgatatatgcagttaaactttatgttaaaag-caaattgaattcttattatagaacaaggattctctaattactttgaagtct 260  Q
    || || |||| ||||||||||||| ||||| | ||||||||||||||||||| | ||||||| |||| ||||||||||| ||||    
T  9284620 ataatttatgtagttaaactttatattaaaggtcaaattgaattcttattatcggacaaggagtctccaattactttgatgtct 9284703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 88 - 230
Target Start/End: Complemental strand, 10371644 - 10371503
Alignment:
Q  88 gagaatcatacaagcaagagaaggtactccttatttattatctgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatg 187  Q
    ||||||||||||||||||||||||||||  || |||  || ||||||||||| | ||||||||||||| |||||||||| |||||||||||| |||||||    
T  10371644 gagaatcatacaagcaagagaaggtacttattgttt--taactgagtttttgttgtgtataagttaatatcagttcaatggatccatcatattatatatg 10371547  T
Q  188 cagttaaactttatgttaaaag-caaattgaattcttattatag 230  Q
    |||||||||| | ||||||| | |||||||||||||||| ||||    
T  10371546 cagttaaactctgtgttaaaggtcaaattgaattcttatcatag 10371503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 12012779 - 12012858
Alignment:
Q  1 caagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 80  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||    
T  12012779 caagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctccttccc 12012858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 9294990 - 9295144
Alignment:
Q  100 agcaagagaaggtactcctt-atttattatctgagttttt-gctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaact 197  Q
    |||||||||||||||| ||| ||| ||||||||||||||| ||| ||||||||||||||| |||| ||| || ||||||||| || ||||  ||||||||    
T  9294990 agcaagagaaggtacttctttattgattatctgagttttttgctttgtataagttaattttagtttaatggacccatcatataatttatgtggttaaact 9295089  T
Q  198 ttatgttaaaag-caaattgaattcttattatagaacaaggattctctaattact 251  Q
     |||| |||| | ||||||||||||||||||||| ||| || |||||||||||||    
T  9295090 ctatgctaaaggtcaaattgaattcttattataggacaggggttctctaattact 9295144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 130 - 266
Target Start/End: Complemental strand, 9320736 - 9320599
Alignment:
Q  130 tgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttattat 228  Q
    |||||||||||| ||||| |||| || ||| |||||| || ||||||||||||||||  ||||||||| |||| || | | ||||||||||| |||||||    
T  9320736 tgagtttttgctatgtattagttgatgtcaattcaatggacccatcatatgatatattaagttaaactctatgctataggtcaaattgaatttttattat 9320637  T
Q  229 agaacaaggattctctaattactttgaagtctctacct 266  Q
     | |||||||| ||||||||||||||||||||||||||    
T  9320636 cggacaaggatactctaattactttgaagtctctacct 9320599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 12019118 - 12019194
Alignment:
Q  1 caagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttcctt 77  Q
    |||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||    
T  12019118 caagttagttatgttgaaggaattcctaatttcgatgaagccatgatttgtgttggaagtcttgtaccaccttcctt 12019194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 99 - 266
Target Start/End: Complemental strand, 9364409 - 9364245
Alignment:
Q  99 aagcaagagaaggtactccttatttattatctgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactt 198  Q
    |||||||||||||||   ||| ||  |||||||||| |||||| |||||||| | || || |||||||  | ||||||||||||||||| | |||||||     
T  9364409 aagcaagagaaggta---cttgttgtttatctgagtctttgctgtgtataagct-atatccgttcaatgaacccatcatatgatatatgtacttaaactc 9364314  T
Q  199 tatgttaaaag-caaattgaattcttattatagaacaaggattctctaattactttgaagtctctacct 266  Q
    ||| ||||| | ||||| ||||||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  9364313 tatattaaaggtcaaatggaattcttattataggacaaggagtctctaattactttgaagtctatacct 9364245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 266
Target Start/End: Complemental strand, 10347571 - 10347401
Alignment:
Q  88 gagaatcatacaagcaagagaaggtactccttatttattatctgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatg 187  Q
    ||||||||| |||||||||||||||||| ||||||  ||| ||||||||||| | |||||||||| || |||||||||| ||   ||||||| |||||||    
T  10347571 gagaatcatccaagcaagagaaggtacttcttattgtttaactgagtttttgttgtgtataagtt-atatcagttcaatggacttatcatatcatatatg 10347473  T
Q  188 cagttaaactttatgttaaaagcaaattgaattcttattatagaaca-aggattctctaattactttgaagtctctacct 266  Q
    |||||||||| |||        |||||||||||||||| |||| | | || ||| ||||||||||||||||||| |||||    
T  10347472 cagttaaactctat--------caaattgaattcttatcataggatagagtattttctaattactttgaagtctttacct 10347401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 266
Target Start/End: Original strand, 12019285 - 12019388
Alignment:
Q  161 ttcaatagatccatcatatgatatatgcagttaaactttatgttaaaagcaaattgaattcttattatagaacaaggattctctaattactttgaagtct 260  Q
    |||||| || ||||||||||||||||| ||||||||| ||||||||     | | ||||||||||||||| |||||||||||||||||||||||||||||    
T  12019285 ttcaatggacccatcatatgatatatgtagttaaactctatgttaatgt--attggaattcttattataggacaaggattctctaattactttgaagtct 12019382  T
Q  261 ctacct 266  Q
    ||||||    
T  12019383 ctacct 12019388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 9291655 - 9291566
Alignment:
Q  178 atgatatatgcagttaaactttatgttaaaagc-aaattgaattcttattatagaacaaggattctctaattactttgaagtctctacct 266  Q
    |||||| ||| ||||||||| |||| |||| |  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9291655 atgatacatgtagttaaactctatgctaaaggttaaattgaattcttattataggacaaggattctctaattactttgaagtctctacct 9291566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 9291830 - 9291755
Alignment:
Q  5 ttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 80  Q
    |||||| ||||||||||||||||||||| ||| |||||||||||||||||| ||||||| | ||||||||||||||    
T  9291830 ttagttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctaccaccttccttccc 9291755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 11987721 - 11987796
Alignment:
Q  5 ttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 80  Q
    |||||| |||||| ||||||||||| |||||| |||||||||||||||||||||||||||| ||||| ||||||||    
T  11987721 ttagttatgttgacggaattcctaaattcgatgaagctatgatttgtgttggaagtcttgtaccaccctccttccc 11987796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 9320894 - 9320815
Alignment:
Q  1 caagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 80  Q
    |||||||||| |||||||||||||||| ||||| ||  || |||| ||||||||||||||||||| ||||||||||||||    
T  9320894 caagttagttatgttgaaggaattcctgatttccatggagttatgttttgtgttggaagtcttgtcccaccttccttccc 9320815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 256
Target Start/End: Original strand, 9061545 - 9061675
Alignment:
Q  130 tgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttattat 228  Q
    |||||||||||| |||||||||| || |||||||||| |  ||||||||| ||||||| ||||||||| |||| |||| |  ||||||||||||| ||||    
T  9061545 tgagtttttgctatgtataagttgatgtcagttcaatgg--ccatcatataatatatgtagttaaactctatgctaaaggttaaattgaattcttgttat 9061642  T
Q  229 agaacaag-----gattctctaattactttgaa 256  Q
    || |||||     ||||||||||||||||||||    
T  9061643 aggacaaggatttgattctctaattactttgaa 9061675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 266
Target Start/End: Complemental strand, 9328355 - 9328228
Alignment:
Q  130 tgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttattat 228  Q
    |||||||||||| |||||||||| || ||| |||||| || || |||||||||||||| ||||||||| |||| |||| | |||||||||||||||  ||    
T  9328355 tgagtttttgctatgtataagttgatgtcaattcaatggacccgtcatatgatatatgaagttaaactctatgctaaaggtcaaattgaattctta--at 9328258  T
Q  229 agaacaaggattctctaattactttgaagtctctacct 266  Q
    ||        ||||||||||||||||||||||||||||    
T  9328257 ag--------ttctctaattactttgaagtctctacct 9328228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 10335764 - 10335692
Alignment:
Q  5 ttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttcctt 77  Q
    |||||| ||||||||||||||||||||| ||| |  |||||||||||||||||||||||||  ||||||||||    
T  10335764 ttagttatgttgaaggaattcctaatttggatgacactatgatttgtgttggaagtcttgtttcaccttcctt 10335692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 12006543 - 12006595
Alignment:
Q  214 ttgaattcttattatagaacaaggattctctaattactttgaagtctctacct 266  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  12006543 ttgaattcttattttaggacaaggattctctaattactttgaagtctctacct 12006595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 9061389 - 9061468
Alignment:
Q  1 caagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 80  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||| ||| |||||||||||| ||  |||||| ||||||    
T  9061389 caagttagttatgttgaaggaattcctaattttgatgaagctatgttttatgttggaagtctcgtatcacctttcttccc 9061468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 9328511 - 9328432
Alignment:
Q  1 caagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 80  Q
    |||||||||| |||||||||||||||| ||||| || | | |||| ||| ||||||||||||||| ||||||||||||||    
T  9328511 caagttagttatgttgaaggaattcctgatttccatgatgttatgttttctgttggaagtcttgtaccaccttccttccc 9328432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 9274276 - 9274200
Alignment:
Q  181 atatatgcagttaaactttatgttaaaag-caaattgaattcttattatagaacaaggattctctaattactttgaa 256  Q
    ||||||| |||||||||||||| |||| | ||  ||||||||||||||||| |||||||||| ||||||||||||||    
T  9274276 atatatgtagttaaactttatgctaaaggtcatgttgaattcttattataggacaaggattcactaattactttgaa 9274200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 8573756 - 8573835
Alignment:
Q  1 caagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 80  Q
    ||||| |||| ||||||||||||||||||||   ||  ||||||| ||||||||||||||||||| ||||||| ||||||    
T  8573756 caagtcagttatgttgaaggaattcctaattggaatgcagctatgttttgtgttggaagtcttgtaccacctttcttccc 8573835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 8573934 - 8574024
Alignment:
Q  171 ccatcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttatta--tagaacaaggattctctaattactttgaagt 258  Q
    |||||||||||||||||  |||||||| |||| |||| | |||||| ||||||||| |  ||| |||||||||||||||||||||||||||    
T  8573934 ccatcatatgatatatgtggttaaactctatgctaaaggtcaaattaaattcttatcacataggacaaggattctctaattactttgaagt 8574024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 10353021 - 10352942
Alignment:
Q  1 caagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 80  Q
    |||||||||| |||| ||| ||||| |||||| ||| |  ||||||||||||||||||||||||| ||||||| ||||||    
T  10353021 caagttagttatgttcaagaaattcttaatttggatgacactatgatttgtgttggaagtcttgtaccaccttacttccc 10352942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 245
Target Start/End: Complemental strand, 9272410 - 9272296
Alignment:
Q  132 agtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttattatag 230  Q
    |||||||||| ||||||||||||| |||||| |||  | |||||||||||| | |||| ||||||   ||| |||| | | |||||||||||||||||||    
T  9272410 agtttttgctatgtataagttaatgtcagtttaatgaacccatcatatgatctttgcaattaaacccaatgctaaaggtctaattgaattcttattatag 9272311  T
Q  231 aacaaggattctcta 245  Q
    ||  |||||||||||    
T  9272310 aaataggattctcta 9272296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 12006361 - 12006427
Alignment:
Q  14 ttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 80  Q
    |||| |||||||| ||||||||| |||| ||||||||||||||||||||||| |  |||||||||||    
T  12006361 ttgagggaattccaaatttcgatgaagcgatgatttgtgttggaagtcttgtactgccttccttccc 12006427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 10352794 - 10352738
Alignment:
Q  210 caaattgaattcttattatagaacaaggattctctaattactttgaagtctctacct 266  Q
    |||||||||||||||| |||| | |||||||||||||||||||||| |||| |||||    
T  10352794 caaattgaattcttatcataggataaggattctctaattactttgacgtctttacct 10352738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 8579736 - 8579811
Alignment:
Q  2 aagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttcctt 77  Q
    |||||| ||||||| ||||||||||||||||| || || ||||||||| ||||||||  ||| | |||||||||||    
T  8579736 aagttacttgtgttcaaggaattcctaatttcaatgaaactatgatttatgttggaacccttctaccaccttcctt 8579811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 266
Target Start/End: Original strand, 9065937 - 9066135
Alignment:
Q  82 aggaaagagaatcatacaagcaagagaaggtactccttatttattatctgagtttt-------tgctctgtataagttaatttcagttcaatagatcca- 173  Q
    ||||| |||||||  |||| |||||||||||||| |||||||||| ||| ||||||       |||| |||| |||||||| |||||||||| || |||     
T  9065937 aggaaggagaatcgaacaaccaagagaaggtacttcttatttattttctaagttttgagttcttgctttgtacaagttaatatcagttcaatggacccaa 9066036  T
Q  174 -------tcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttattatagaacaaggattctctaattactttgaagtctctacc 265  Q
           |||||||||||||| || ||||||||  | | || | ||||||||| |||||| |||| | || |||||||||||||||||||||| ||||||    
T  9066037 tgacccatcatatgatatatgtagctaaacttt--gctcaaggtcaaattgaagtcttatcataggataaagattctctaattactttgaagtttctacc 9066134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 10371749 - 10371679
Alignment:
Q  1 caagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccacc 71  Q
    |||||||||| ||||||||||| | ||||||| ||| | |||||| |||||||||| |||||||| |||||    
T  10371749 caagttagttatgttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtaccacc 10371679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 9364523 - 9364467
Alignment:
Q  18 aggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttc 74  Q
    ||||||||||||| |  || ||||||||||||||||||| |||||||| ||||||||    
T  9364523 aggaattcctaatatgaatgaagctatgatttgtgttggtagtcttgtaccaccttc 9364467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 10341250 - 10341182
Alignment:
Q  12 tgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 80  Q
    |||||||||||||||| |||| ||| | |||||||| |||||||||||| | || ||||||| ||||||    
T  10341250 tgttgaaggaattcctgatttggatgatgctatgatgtgtgttggaagtatagtaccacctttcttccc 10341182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 10347672 - 10347594
Alignment:
Q  5 ttagttgtgttgaaggaattcct---aatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 80  Q
    |||||| ||||||||||||||||   ||| |  || || ||||| ||||||||||||||||||| ||||||||||||||    
T  10347672 ttagttatgttgaaggaattcctcctaatatgaatgaaactatgttttgtgttggaagtcttgtcccaccttccttccc 10347594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 7115875 - 7115906
Alignment:
Q  1 caagttagttgtgttgaaggaattcctaattt 32  Q
    ||||||||||||||||||||||||||||||||    
T  7115875 caagttagttgtgttgaaggaattcctaattt 7115906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 9274412 - 9274333
Alignment:
Q  1 caagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 80  Q
    |||||||||| |||| ||||||||||||| ||| ||  | |||| ||||| ||||||||| |||| ||||| ||||||||    
T  9274412 caagttagttttgttaaaggaattcctaacttcaatggaactattatttgggttggaagttttgtaccaccctccttccc 9274333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 10335665 - 10335589
Alignment:
Q  89 agaatcatacaagcaagagaaggtactccttatttattatctgagtttttgctctgtataagttaatttcagttcaat 166  Q
    |||||| |||||||||| ||||||||| ||||||  ||  ||||||||||| | |||||||||| || ||||||||||    
T  10335665 agaatcgtacaagcaagggaaggtacttcttattgtttgactgagtttttgttgtgtataagtt-atatcagttcaat 10335589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 10341082 - 10341038
Alignment:
Q  211 aaattgaattcttattatagaacaaggattctctaattactttga 255  Q
    ||||||||||||||| |||| | ||||||||||||||||| ||||    
T  10341082 aaattgaattcttatcataggataaggattctctaattaccttga 10341038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 19393258 - 19393318
Alignment:
Q  211 aaattgaattcttattatagaacaag-----gattctctaattactttgaagtctctacct 266  Q
    |||||||||||||||||||| | |||     ||||||||||||||||||||||||| ||||    
T  19393258 aaattgaattcttattataggaaaaggattagattctctaattactttgaagtctcaacct 19393318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 132 - 266
Target Start/End: Complemental strand, 4208 - 4073
Alignment:
Q  132 agtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttattatag 230  Q
    |||||||||| ||||||||||||| || ||||||| || |||||||||||| |||  ||||||||| | || |||||  |||||||||||||||||||||    
T  4208 agtttttgctgtgtataagttaatatctgttcaatggacccatcatatgatttatttagttaaactctgtgctaaaactcaaattgaattcttattatag 4109  T
Q  231 aacaaggattctctaattactttgaagtctctacct 266  Q
     | ||||||||| ||||||||||||| |||||||||    
T  4108 gaaaaggattctataattactttgaattctctacct 4073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 4351 - 4289
Alignment:
Q  15 tgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttcctt 77  Q
    ||||| ||||||| ||||| ||  ||||| ||||||||||||||||||||| |||||||||||    
T  4351 tgaagaaattcctgatttcaatggagctaagatttgtgttggaagtcttgtaccaccttcctt 4289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 130 - 266
Target Start/End: Complemental strand, 37462236 - 37462098
Alignment:
Q  130 tgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag--caaattgaattcttatta 227  Q
    |||||||||| | ||||||||||  | | |||||| | || ||||||||||||||||| ||||||  | |||| ||||||  |||||||||||||| |||    
T  37462236 tgagtttttgttatgtataagtttctgttagttcattggacccatcatatgatatatgtagttaagttctatgctaaaaggtcaaattgaattcttgtta 37462137  T
Q  228 tagaacaaggattctctaattactttgaagtctctacct 266  Q
    ||| |||||||||||||||||||||||||||||||||||    
T  37462136 taggacaaggattctctaattactttgaagtctctacct 37462098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 41966949 - 41967017
Alignment:
Q  12 tgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 80  Q
    ||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||| ||||||||||||||    
T  41966949 tgttgaaggaattcctaattttgatgaagccatgttttgtgttggaagtcttgtaccaccttccttccc 41967017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 266
Target Start/End: Original strand, 41967066 - 41967236
Alignment:
Q  96 tacaagcaagagaaggtactccttatttattatctgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaa 195  Q
    |||||||||||||||||||| ||| || ||||||| || ||||||| |||||| ||||  || ||| |||| || ||||||||  ||| ||| | |||||    
T  41967066 tacaagcaagagaaggtacttcttgttcattatcttagcttttgctttgtatatgttagatt-agtgcaatggacccatcatacaatacatgtacttaaa 41967164  T
Q  196 ctttatgttaaaag-caaattgaattcttattatagaacaaggattctctaattactttgaagtctctacct 266  Q
    || ||||||||| |  |||||||||||||||||||| | ||  ||||||||||||||| |||| || |||||    
T  41967165 ctctatgttaaaggttaaattgaattcttattataggataactattctctaattacttcgaaggctttacct 41967236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 26574580 - 26574525
Alignment:
Q  210 caaattgaattcttattatagaacaaggattctctaattactttgaagtctctacc 265  Q
    |||||||||||||||| |||| | |||||||||||||||||||||| |||| ||||    
T  26574580 caaattgaattcttatcataggataaggattctctaattactttgacgtctttacc 26574525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University