View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19442_high_3 (Length: 488)
Name: NF19442_high_3
Description: NF19442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19442_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 9297260 - 9296956
Alignment:
| Q |
19 |
tcttacactcttgaactatggcatcatcaattgtcatgaatgagttataattgttttaaaatttaaagtatatggtaaaccctcacattggcttgaatga |
118 |
Q |
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| T |
9297260 |
tcttacactcttgaattatggcatcatcaattgtcatgaatgagttataattgttttaaaatttaaagtatatggtaaaccctcacattggcttgaa--- |
9297164 |
T |
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| Q |
119 |
accacctttgagtgactcactcatccaataacaatttgtgcattgatgctgaaaatcaatctttgaatgctgtataatgcaattgattgatgctccctta |
218 |
Q |
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| T |
9297163 |
-ccacct--gagtgactcacccat----taacaatttatgcattgatgccgaaaatcaatctttgaatactgtataatgcaattgattgatgctcccttg |
9297071 |
T |
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| Q |
219 |
atgtgtttcttgaatttaattatacaaaaactaagtaacctattgcattagtaatggtggagagcaggatatctctaacttgagagctcagttgggagag |
318 |
Q |
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| T |
9297070 |
atgtgttt-ttgaatttatttatacaaaaactaagtaacctattgcattagtaatggtggagagcaagatatctctaacttgagggctcagttgggagag |
9296972 |
T |
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| Q |
319 |
aagtattgaggaccaa |
334 |
Q |
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| T |
9296971 |
aagtattgaggaccaa |
9296956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 379 - 473
Target Start/End: Complemental strand, 9296960 - 9296872
Alignment:
| Q |
379 |
accaatcctacaaaaaatcatgattattttgaaattgaaattgaaattgaagttcttgacatattgattacacccttgaaatcaaattttaatat |
473 |
Q |
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| T |
9296960 |
accaatcctacaaaaaatcatgattattttgaaattgaaattgaaa------ttcttgacatattgattaaacccttcaaataaaattttaatat |
9296872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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