View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19442_high_6 (Length: 369)

Name: NF19442_high_6
Description: NF19442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19442_high_6
NF19442_high_6
[»] chr4 (2 HSPs)
chr4 (164-320)||(45348622-45348778)
chr4 (164-320)||(45358101-45358257)
[»] chr1 (3 HSPs)
chr1 (164-320)||(45119233-45119389)
chr1 (164-216)||(41880666-41880718)
chr1 (321-354)||(45119379-45119412)
[»] chr3 (1 HSPs)
chr3 (164-220)||(42343623-42343679)
[»] chr5 (2 HSPs)
chr5 (282-354)||(15340530-15340602)
chr5 (164-248)||(11888026-11888112)
[»] scaffold0267 (1 HSPs)
scaffold0267 (164-248)||(7293-7378)
[»] chr8 (2 HSPs)
chr8 (164-215)||(11786197-11786247)
chr8 (164-248)||(30646604-30646689)
[»] scaffold0141 (1 HSPs)
scaffold0141 (164-248)||(16379-16465)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 164 - 320
Target Start/End: Complemental strand, 45348778 - 45348622
Alignment:
Q  164 ataaggcacaaaaacactaaaaggtaggattagggacctgaacccatgtacacaaaatcattacaacagatccaaactaaggcaaggcaaagtaaaagct 263  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45348778 ataaggcacaaaaacactaaaagacaggattagggacctgaacccatgtacacaaaatcattacaacagatccaaactaaggcaaggcaaagtaaaagct 45348679  T
Q  264 cacagaaactatagcaaaagaaacatatcaaaatagaattctagccaacaacagcaa 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45348678 cacagaaactatagcaaaagaaacatatcaaaatagaattctagccaacaacagcaa 45348622  T

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Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 164 - 320
Target Start/End: Complemental strand, 45358257 - 45358101
Alignment:
Q  164 ataaggcacaaaaacactaaaaggtaggattagggacctgaacccatgtacacaaaatcattacaacagatccaaactaaggcaaggcaaagtaaaagct 263  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45358257 ataaggcacaaaaacactaaaagacaggattagggacctgaacccatgtacacaaaatcattacaacagatccaaactaaggcaaggcaaagtaaaagct 45358158  T
Q  264 cacagaaactatagcaaaagaaacatatcaaaatagaattctagccaacaacagcaa 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45358157 cacagaaactatagcaaaagaaacatatcaaaatagaattctagccaacaacagcaa 45358101  T

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Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 164 - 320
Target Start/End: Original strand, 45119233 - 45119389
Alignment:
Q  164 ataaggcacaaaaacactaaaaggtaggattagggacctgaacccatgtacacaaaatcattacaacagatccaaactaaggcaaggcaaagtaaaagct 263  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  45119233 ataaggcacaaaaacactaaaaggcaggattagggacctgaacccatgtacataaaatcattacaacagatccaaactaaggcaaggcaaagtaaaagct 45119332  T
Q  264 cacagaaactatagcaaaagaaacatatcaaaatagaattctagccaacaacagcaa 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45119333 cacagaaactatagcaaaagaaacatatcaaaatagaattctagccaacaacagcaa 45119389  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 41880666 - 41880718
Alignment:
Q  164 ataaggcacaaaaacactaaaaggtaggattagggacctgaacccatgtacac 216  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41880666 ataaggcacaaaaacactaaaaggcaggattagggacctgaacccatgtacac 41880718  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 321 - 354
Target Start/End: Original strand, 45119379 - 45119412
Alignment:
Q  321 aacaacagcaatttcattttttataggctttgga 354  Q
    ||||||||||||||||||||||||||||||||||    
T  45119379 aacaacagcaatttcattttttataggctttgga 45119412  T

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Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 42343679 - 42343623
Alignment:
Q  164 ataaggcacaaaaacactaaaaggtaggattagggacctgaacccatgtacacaaaa 220  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  42343679 ataaggcacaaaaacactaaaaggcaggattagggacctgaacctatgtacacaaaa 42343623  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 282 - 354
Target Start/End: Complemental strand, 15340602 - 15340530
Alignment:
Q  282 agaaacatatcaaaatagaattctagccaacaacagcaaaacaacagcaatttcattttttataggctttgga 354  Q
    |||| ||| ||||||||  ||||||||||| |||||| |||||||| ||||||||||||||||||||||||||    
T  15340602 agaagcatttcaaaatattattctagccaataacagcgaaacaacaacaatttcattttttataggctttgga 15340530  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 11888026 - 11888112
Alignment:
Q  164 ataaggcacaaaaacactaaaaggt-aggatta-gggacctgaacccatgtacacaaaatcattacaacagatccaaactaaggcaa 248  Q
    |||||||||||||| |||||||  | ||||||  ||||||||||||||||||||||| |  |||||| || | ||||||||||||||    
T  11888026 ataaggcacaaaaatactaaaaaatcaggattttgggacctgaacccatgtacacaagagtattacaccaaagccaaactaaggcaa 11888112  T

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Target: scaffold0267 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 7293 - 7378
Alignment:
Q  164 ataaggcacaaaaacactaaaaggtaggatta-gggacctgaacccatgtacacaaaatcattacaacagatccaaactaaggcaa 248  Q
    |||||||||||||||||||||||  ||||||  ||| ||||||||||||||||||| ||||||||| || | ||||||||| ||||    
T  7293 ataaggcacaaaaacactaaaagtcaggattttggggcctgaacccatgtacacaagatcattacaccaaagccaaactaaagcaa 7378  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 11786197 - 11786247
Alignment:
Q  164 ataaggcacaaaaacactaaaaggtaggattagggacctgaacccatgtaca 215  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  11786197 ataaggcacaaaa-cactaaaaggcaggattagggacctgaacccatgtaca 11786247  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 30646689 - 30646604
Alignment:
Q  164 ataaggcacaaaaac-actaaaaggtaggattagggacctgaacccatgtacacaaaatcattacaacagatccaaactaaggcaa 248  Q
    ||||||||||||||  |||||| |  ||||||||||  |||||||||| ||||||| | ||||||| || ||||||||||||||||    
T  30646689 ataaggcacaaaaaatactaaatgtcaggattaggggtctgaacccatatacacaagaacattacaccaaatccaaactaaggcaa 30646604  T

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Target: scaffold0141 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 16379 - 16465
Alignment:
Q  164 ataaggcacaaaaacactaaaaggt-aggatta-gggacctgaacccatgtacacaaaatcattacaacagatccaaactaaggcaa 248  Q
    |||||||||||||| ||||||| || ||||||  ||||| ||||||||||||||||| |  |||||| || | ||||||||||||||    
T  16379 ataaggcacaaaaatactaaaaagtcaggattttgggacttgaacccatgtacacaagagtattacaccaaagccaaactaaggcaa 16465  T

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