View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19442_high_7 (Length: 335)
Name: NF19442_high_7
Description: NF19442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19442_high_7 |
 | |
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| [»] scaffold0667 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 29)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 10371931 - 10371617
Alignment:
| Q |
1 |
atggttctagagatagttggtttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgagacccttgtgttattctcgtgatgg |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10371931 |
atggttctagagatagttggtgtaaactttttactttggttaaatcaagtttgggtttacctttggaatctttgagacccttgtgttattctcgtgatgg |
10371832 |
T |
|
| Q |
101 |
aaggaaggttcttttggaaggagatcatgttttgttgaaggtacaacattggaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10371831 |
aaggaaggttcttttggaaggagatcatgttttgttggaggtacaacattggaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaa |
10371732 |
T |
|
| Q |
201 |
ggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtaccaccacccccttaccttgttgataatggtaggaagaaggagaatcatacaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10371731 |
ggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtaccaccacccccttaccttgttgataatggtaggaagaaggagaatcatacaa |
10371632 |
T |
|
| Q |
301 |
gcaagagaagatact |
315 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
10371631 |
gcaagagaaggtact |
10371617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 8 - 335
Target Start/End: Complemental strand, 10347851 - 10347524
Alignment:
| Q |
8 |
tagagatagttggtttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgagacccttgtgttattctcgtgatggaaggaag |
107 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| | | || |||| |||||||||||| ||| ||||| ||| | ||||||||| |||||||||| ||| |
|
|
| T |
10347851 |
tagagatagttggtgtaaactttttactatggctgagtcgtgtttcgatttacctttgaaattgttgaggcccatatgttattctagtgatggaagtaag |
10347752 |
T |
|
| Q |
108 |
gttcttttggaaggagatcatgttttgttgaaggtacaacattggaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaa--- |
204 |
Q |
| |
|
||||| |||||| ||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10347751 |
gttctgttggaaagagctcatgttttgttggaggtacaacataggaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattc |
10347652 |
T |
|
| Q |
205 |
attctaatttggatgatgctatggtttgtgttggtagtcttgtaccaccacccccttaccttgttgataatggtaggaagaaggagaatcatacaagcaa |
304 |
Q |
| |
|
| ||||| || |||| ||||| |||||||||| |||||||| ||||| || | || |||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
10347651 |
ctcctaatatgaatgaaactatgttttgtgttggaagtcttgtcccaccttcc---ttccctgttgataatcgtaggaagaaggagaatcatccaagcaa |
10347555 |
T |
|
| Q |
305 |
gagaagatactccttatttattatctgagtt |
335 |
Q |
| |
|
|||||| |||| |||||| ||| ||||||| |
|
|
| T |
10347554 |
gagaaggtacttcttattgtttaactgagtt |
10347524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 9292010 - 9291711
Alignment:
| Q |
1 |
atggttctagagatagttggtttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgagacccttgtgttattctcgtgatgg |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| | || ||||| |||||||||| || || ||||||||| | ||||| |
|
|
| T |
9292010 |
atggttctagagatagttggtgtaaactttttactttggttaaatcgcggttca------ctttgaaatctttgaggcctttatgttattctagggatgg |
9291917 |
T |
|
| Q |
101 |
aaggaaggttcttttggaaggagatcatgttttgttgaaggtacaacattggaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaa |
200 |
Q |
| |
|
||| |||||||| ||||| ||| ||| ||||||||| ||||| | ||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9291916 |
aagtaaggttctgttggacggaactcaggttttgttggaggtaaatcataggaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaa |
9291817 |
T |
|
| Q |
201 |
ggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtaccaccacccccttaccttgttgataatggtaggaagaaggagaatcatacaa |
300 |
Q |
| |
|
|||| | ||||||||||||| |||||| ||||||||| |||||| ||||||| || | || |||||||||| |||||||||||||||||||||| | |
|
|
| T |
9291816 |
ggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctaccaccttcc---ttccctgttgataattgtaggaagaaggagaatcatacga |
9291720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 8573574 - 8573885
Alignment:
| Q |
1 |
atggttctagagatagttggtttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgagacccttgtgttattctcgtgatgg |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||| |||| | || ||| |||||| ||| || || |||||||| ||||||| |
|
|
| T |
8573574 |
atggttctagagatagttggtgtaaactttttactttcgttaaatcgtgtttcactccacattttaaatcttcgaggcctttaggttattctagtgatgg |
8573673 |
T |
|
| Q |
101 |
aaggaaggttcttttggaaggagatcatgttttgttgaaggtacaacattggaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaa |
200 |
Q |
| |
|
||| |||||||| ||||||||| | | ||||||| | ||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8573674 |
aagtaaggttctgttggaaggaattgaagttttgtcggaggtatgtcataggaagctgttttggtatgatttgaagagtgaacaagtcagttatgttgaa |
8573773 |
T |
|
| Q |
201 |
ggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtaccaccacccccttaccttgttgataatggtaggaagaaggagaatcatacaa |
300 |
Q |
| |
|
|||| | |||||| | ||| |||||| |||||||||| |||||||||||||| | | || |||||||||| |||||||| |||||||| ||||| |
|
|
| T |
8573774 |
ggaattcctaattggaatgcagctatgttttgtgttggaagtcttgtaccacctttc---ttccctgttgataattgtaggaaggaggagaattgtacaa |
8573870 |
T |
|
| Q |
301 |
gcaagagaagatact |
315 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
8573871 |
gcaagagaaggtact |
8573885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 152 - 306
Target Start/End: Complemental strand, 9315962 - 9315811
Alignment:
| Q |
152 |
gaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtacca |
251 |
Q |
| |
|
|||||||||||||| ||| |||| |||||||||||||| |||||||||||||| ||||||||||||||| |||||| ||||||||| |||||||||||| |
|
|
| T |
9315962 |
gaagctgttttggtgtgacttgatgagtgaacaagttatttatgttgaaggaatttctaatttggatgaagctatgatttgtgttgaaagtcttgtacca |
9315863 |
T |
|
| Q |
252 |
ccacccccttaccttgttgataatggtaggaagaaggagaatcatacaagcaaga |
306 |
Q |
| |
|
|| || | || ||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
9315862 |
ccttcc---ttccctgttgattattgtaggaagaaggagaatcatacaagcaaga |
9315811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 152 - 322
Target Start/End: Complemental strand, 10335799 - 10335632
Alignment:
| Q |
152 |
gaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtacca |
251 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||| ||||| |||||||||| |||||||| || |
|
|
| T |
10335799 |
gaagttgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgacactatgatttgtgttggaagtcttgtttca |
10335700 |
T |
|
| Q |
252 |
ccacccccttaccttgttgataatggtaggaagaaggagaatcatacaagcaagagaagatactccttatt |
322 |
Q |
| |
|
| | ||||||| |||||||||| ||||||||||| |||||| |||||||||| |||| |||| |||||| |
|
|
| T |
10335699 |
c--cttccttacc-tgttgataatcgtaggaagaagcagaatcgtacaagcaagggaaggtacttcttatt |
10335632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 9065662 - 9065990
Alignment:
| Q |
1 |
atggttctagagatagttggtttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgagacccttgtgttattctcgtgatgg |
100 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||| ||||| |||| ||| || |||| | ||| ||| || | ||||||| ||||||| |
|
|
| T |
9065662 |
atggatctagagatagttggtgtaaactttttactttggtcaaatcttgtttccattcacatttgacagcttcgaggcctctaggttattccggtgatgg |
9065761 |
T |
|
| Q |
101 |
aaggaaggttcttttggaaggagatcatgttttgttgaaggtacaacattggaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaa |
200 |
Q |
| |
|
||| |||||||| ||||||| | | | ||||||||| ||||| | ||| |||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9065762 |
aagtaaggttctgttggaagcaattgaggttttgttggaggtagatcatcagaagctcttttggtatgatttgaagagtgaacaagttatttatgttgaa |
9065861 |
T |
|
| Q |
201 |
ggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtaccaccacccccttaccttgttgataatggtaggaagaaggagaatcatacaa |
300 |
Q |
| |
|
||| | |||||| | |||| || || ||||||||| |||||||||||| || |||| || |||||||||| |||| ||||||||||| |||| |
|
|
| T |
9065862 |
ggagttcctaattggaatgacactgtgatttgtgttgaaagtcttgtacca--acttcctt-ccctgttgataattgtag---gaaggagaatcgaacaa |
9065955 |
T |
|
| Q |
301 |
gcaagagaagatactccttatttattatctgagtt |
335 |
Q |
| |
|
||||||||| |||| |||||||||| ||| |||| |
|
|
| T |
9065956 |
ccaagagaaggtacttcttatttattttctaagtt |
9065990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 9061210 - 9061459
Alignment:
| Q |
1 |
atggttctagagatagttggtttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgagacccttgtgttattctcgtgatgg |
100 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||| |||| ||| ||||||||| | |||||| || || ||||||||| ||||||| |
|
|
| T |
9061210 |
atggatctagagatagttggtgtaaactttttactttggttaaatcgtgtttcaattcacctttggactttttgaggccgttatgttattctagtgatgg |
9061309 |
T |
|
| Q |
101 |
aaggaaggttcttttggaaggagatcatgttttgttgaaggtacaacatt--ggaagctgttttggtatgatttgaagagtgaacaagttagttatgttg |
198 |
Q |
| |
|
| | |||||||| ||||||| | ||| | ||| | || ||| | |||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
9061310 |
aggtaaggttctgttggaagcaaatcctaacttg-----gataaaactcttaggaagctgttttggtatgatctcaagagtgaacaagttagttatgttg |
9061404 |
T |
|
| Q |
199 |
aaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtaccacc |
253 |
Q |
| |
|
|||||| | ||||||| ||||| |||||| ||| |||||| ||||| ||| |||| |
|
|
| T |
9061405 |
aaggaattcctaattttgatgaagctatgttttatgttggaagtctcgtatcacc |
9061459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 130 - 307
Target Start/End: Original strand, 12012729 - 12012900
Alignment:
| Q |
130 |
ttttgttgaaggtacaacattggaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaatttggatgatgctatggt |
229 |
Q |
| |
|
|||||||| ||||| | ||| ||||||| |||||||||||||||||||| |||||||||||||||||||||| | ||||||| ||||| |||||| | |
|
|
| T |
12012729 |
ttttgttggaggtaaatcataagaagctggtttggtatgatttgaagagt---caagttagttatgttgaaggaattcctaatttcgatgaagctatgat |
12012825 |
T |
|
| Q |
230 |
ttgtgttggtagtcttgtaccaccacccccttaccttgttgataatggtaggaagaaggagaatcatacaagcaagag |
307 |
Q |
| |
|
||||||||| ||||||||||||| || |||| || |||||||||| ||||||||||| ||||||| |||||||||| |
|
|
| T |
12012826 |
ttgtgttggaagtcttgtaccac--cctcctt-ccctgttgataattctaggaagaaggggaatcattcaagcaagag |
12012900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 152 - 306
Target Start/End: Original strand, 11987686 - 11987837
Alignment:
| Q |
152 |
gaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtacca |
251 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||| |||| | |||| || ||||| |||||| |||||||||| |||||||||||| |
|
|
| T |
11987686 |
gaagctggtttggtatgatttgaagagtgaacaatttagttatgttgacggaattcctaaattcgatgaagctatgatttgtgttggaagtcttgtacca |
11987785 |
T |
|
| Q |
252 |
ccacccccttaccttgttgataatggtaggaagaaggagaatcatacaagcaaga |
306 |
Q |
| |
|
| || |||| || |||||||||| ||||||||||| ||||||| ||||||||| |
|
|
| T |
11987786 |
c--cctcctt-ccctgttgataattctaggaagaaggggaatcattcaagcaaga |
11987837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 9274594 - 9274291
Alignment:
| Q |
1 |
atggttctagagatagttggtttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgagacccttgtgttattctcgtgatgg |
100 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||| | || | |||| | || ||||||| ||| || || || ||||||||| ||||||| |
|
|
| T |
9274594 |
atggttctacagatagttggtgtaaactttttactttgatggaaccttgtttccttgtagatttggaaatttttaggcctttatgttattctagtgatgg |
9274495 |
T |
|
| Q |
101 |
aaggaaggttcttttggaaggagatcatgttttgttgaaggtacaacattggaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaa |
200 |
Q |
| |
|
||| |||||||| ||||||||| |||||||| | ||| | | || |||| ||| ||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
9274494 |
aagtaaggttctgttggaaggaattcatgtttcaacggagggaaataataggaacctgatttggtatgatttgaagagtgaacaagttagttttgttaaa |
9274395 |
T |
|
| Q |
201 |
ggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtaccaccacccccttaccttgttgataatggtaggaagaaggagaatcatacaa |
300 |
Q |
| |
|
|||| | |||| || ||| |||| |||| ||||| ||| ||||||||| || |||| || |||||||||| ||||||||||||||||||||||| |
|
|
| T |
9274394 |
ggaattcctaacttcaatggaactattatttgggttggaagttttgtaccac--cctcctt-ccctgttgataattctaggaagaaggagaatcatacaa |
9274298 |
T |
|
| Q |
301 |
gcaagag |
307 |
Q |
| |
|
||||||| |
|
|
| T |
9274297 |
gcaagag |
9274291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 152 - 253
Target Start/End: Original strand, 9284389 - 9284490
Alignment:
| Q |
152 |
gaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtacca |
251 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||| |||||||||||||| | ||||||||||||| |||||| ||||||||| |||||||| ||| |
|
|
| T |
9284389 |
gaagctggtttggtatgatttgaagagtgagcaagttatttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttgtgcca |
9284488 |
T |
|
| Q |
252 |
cc |
253 |
Q |
| |
|
|| |
|
|
| T |
9284489 |
cc |
9284490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 152 - 307
Target Start/End: Complemental strand, 9320925 - 9320773
Alignment:
| Q |
152 |
gaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtacca |
251 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| | || |||| ||| | |||| |||||||||| |||||||| ||| |
|
|
| T |
9320925 |
gaagctgttttggtatgatttgaagagtgcacaagttagttatgttgaaggaattcctgatttccatggagttatgttttgtgttggaagtcttgtccca |
9320826 |
T |
|
| Q |
252 |
ccacccccttaccttgttgataatggtaggaagaaggagaatcatacaagcaagag |
307 |
Q |
| |
|
|| || | || |||||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
9320825 |
ccttcc---ttccctgttgataattctaagaagaaggagaatcgtacaagcaagag |
9320773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 152 - 307
Target Start/End: Complemental strand, 9328542 - 9328390
Alignment:
| Q |
152 |
gaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtacca |
251 |
Q |
| |
|
||||||||||| ||||||||| | ||||| ||||||||||||||||||||||| | || |||| |||||| |||| ||| |||||| |||||||||||| |
|
|
| T |
9328542 |
gaagctgtttttgtatgattttaggagtgcacaagttagttatgttgaaggaattcctgatttccatgatgttatgttttctgttggaagtcttgtacca |
9328443 |
T |
|
| Q |
252 |
ccacccccttaccttgttgataatggtaggaagaaggagaatcatacaagcaagag |
307 |
Q |
| |
|
|| || | || |||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
9328442 |
ccttcc---ttccctgttgataattctaggaagaaggagaatcgtacaagcaagag |
9328390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 310
Target Start/End: Complemental strand, 10341293 - 10341137
Alignment:
| Q |
154 |
agctgttttggtatgatttgaagagtgaacaagttag---ttatgttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtacc |
250 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||| | || ||||||||||||||||| | |||||||| ||| | ||||| |
|
|
| T |
10341293 |
agctgttttggtatgatttggagagtgaacaagttagttattatgttgaaggaattcctgatttggatgatgctatgatgtgtgttggaagtatagtacc |
10341194 |
T |
|
| Q |
251 |
accacccccttaccttgttgataatggtaggaagaaggagaatcatacaagcaagagaag |
310 |
Q |
| |
|
||| | | || |||||| ||| |||||||||||||||||| | ||||||||||||| |
|
|
| T |
10341193 |
acctttc---ttccctgttgacaatcgtaggaagaaggagaatccttcaagcaagagaag |
10341137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 155 - 253
Target Start/End: Original strand, 12019090 - 12019188
Alignment:
| Q |
155 |
gctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtaccacc |
253 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||||||||||||||| | ||||||| ||||| || ||| |||||||||| |||||||||||||| |
|
|
| T |
12019090 |
gctggtttggtatgatttgaagagtcagcaagttagttatgttgaaggaattcctaatttcgatgaagccatgatttgtgttggaagtcttgtaccacc |
12019188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 159 - 307
Target Start/End: Complemental strand, 10353045 - 10352900
Alignment:
| Q |
159 |
ttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattct-aatttggatgatgctatggtttgtgttggtagtcttgtaccaccaccc |
257 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||| ||| ||||||| ||||||||||| ||||| |||||||||| |||||||||||||| | |
|
|
| T |
10353045 |
ttttggtatgatttggagagtaaacaagttagttatgttcaag-aaattcttaatttggatgacactatgatttgtgttggaagtcttgtaccaccttac |
10352947 |
T |
|
| Q |
258 |
ccttaccttgttgataatggtaggaagaaggagaatcatacaagcaagag |
307 |
Q |
| |
|
| || |||||||||| |||||||| ||||||||| ||||||| |||| |
|
|
| T |
10352946 |
---ttccctgttgataatcgtaggaagcaggagaatcctacaagcgagag |
10352900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 85 - 204
Target Start/End: Complemental strand, 16269078 - 16268959
Alignment:
| Q |
85 |
gttattctcgtgatggaaggaaggttcttttggaaggagatcatgttttgttgaaggtacaacattggaagctgttttggtatgatttgaagagtgaaca |
184 |
Q |
| |
|
|||||||| |||||||||| |||||||| || |||||| | | ||||||||| | || || || |||| ||||||||||||||||||||||||||| |
|
|
| T |
16269078 |
gttattctagtgatggaagtaaggttctctttgaaggaattgaggttttgttggacgtgcattataagaagttgttttggtatgatttgaagagtgaacg |
16268979 |
T |
|
| Q |
185 |
agttagttatgttgaaggaa |
204 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
16268978 |
agttagttatgttgaaggaa |
16268959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 9321055 - 9320954
Alignment:
| Q |
1 |
atggttctagagatagttggtttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgagacccttgtgttattctcgtgatgg |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||||| ||| |||||||||||| |||||||||| || || ||||||| ||||||| |
|
|
| T |
9321055 |
atggttctagagatagttggtgtaaactttttactatggttaaatcgtgttacgatttacctttgaaatctttgaggcctttaggttattcgagtgatgg |
9320956 |
T |
|
| Q |
101 |
aa |
102 |
Q |
| |
|
|| |
|
|
| T |
9320955 |
aa |
9320954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 9284259 - 9284370
Alignment:
| Q |
1 |
atggttctagagatagttggtttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgagacccttgtgttattctcgtgatgg |
100 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||| | || ||||| |||| |||||||||| || || |||||||| ||||||| |
|
|
| T |
9284259 |
atggttctagagatagttggtgtaaaatttttactttggttaaatcacggttcactttacgtttgaaatctttgaggcctttaggttattctagtgatgg |
9284358 |
T |
|
| Q |
101 |
aaggaaggttct |
112 |
Q |
| |
|
|| |||||||| |
|
|
| T |
9284359 |
tagtaaggttct |
9284370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 307
Target Start/End: Original strand, 12006317 - 12006469
Alignment:
| Q |
152 |
gaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtacca |
251 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||| ||| |||| |||| | | ||||| ||||| || ||| |||||||||| |||||||||| |
|
|
| T |
12006317 |
gaagctggtttggtatgatttgaagagtgaagaagttaattacattgagggaattccaaatttcgatgaagcgatgatttgtgttggaagtcttgtactg |
12006416 |
T |
|
| Q |
252 |
ccacccccttaccttgttgataatggtaggaagaaggagaatcatacaagcaagag |
307 |
Q |
| |
|
|| || | || |||||| ||| ||| |||||||||||||| |||||||||||| |
|
|
| T |
12006417 |
ccttcc---ttccctgttgagaattgtacgaagaaggagaatcgtacaagcaagag |
12006469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 7115843 - 7115906
Alignment:
| Q |
151 |
ggaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaattt |
214 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||| ||||||||||| | ||||||| |
|
|
| T |
7115843 |
ggaagctggtttggtatgatttgaagagcgaacaagttagttgtgttgaaggaattcctaattt |
7115906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 9328665 - 9328597
Alignment:
| Q |
8 |
tagagatagttggtttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgag |
76 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||| |||| ||||||||||| |||||||||| |
|
|
| T |
9328665 |
tagagatagttggtgtaaactttttactatggttaaatcgtgtttccatttacctttgaaatctttgag |
9328597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 7115979 - 7116020
Alignment:
| Q |
266 |
tgttgataatggtaggaagaaggagaatcatacaagcaagag |
307 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7115979 |
tgttgataattgtaggaagaaggagaatcatacaagcaagag |
7116020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 253
Target Start/End: Complemental strand, 9364571 - 9364470
Alignment:
| Q |
152 |
gaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtacca |
251 |
Q |
| |
|
||||||||||||||| ||| | ||||||||| | |||| | |||| ||||| | ||||| || |||| |||||| ||||||||||||||||||||||| |
|
|
| T |
9364571 |
gaagctgttttggtacgatctcaagagtgaaaacgttactagtgttccaggaattcctaatatgaatgaagctatgatttgtgttggtagtcttgtacca |
9364472 |
T |
|
| Q |
252 |
cc |
253 |
Q |
| |
|
|| |
|
|
| T |
9364471 |
cc |
9364470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 10353175 - 10353107
Alignment:
| Q |
8 |
tagagatagttggtttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgag |
76 |
Q |
| |
|
|||||| ||||||| ||||||||||||| |||||||||| ||| |||||||||||| |||||||||| |
|
|
| T |
10353175 |
tagagagagttggtgtaaactttttactgtggttaaatcttctttcgatttacctttgcaatctttgag |
10353107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 12012615 - 12012705
Alignment:
| Q |
1 |
atggttctagagatagttggtttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgagacccttgtgttattc |
91 |
Q |
| |
|
|||||| || ||||||||||| |||||||||||||||||| |||| |||| | |||||||||| || ||||||||| ||| ||||||| |
|
|
| T |
12012615 |
atggttgtaaagatagttggtgtaaactttttactttggtggaatcgtgtttcgttttacctttgatatttttgagacctttgggttattc |
12012705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 10335910 - 10335872
Alignment:
| Q |
8 |
tagagatagttggtttaaactttttactttggttaaatc |
46 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
10335910 |
tagagatagttggtgtaaacattttactttggttaaatc |
10335872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 11987563 - 11987655
Alignment:
| Q |
8 |
tagagatagttggtttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgagacccttgtgttattctcgtgatgg |
100 |
Q |
| |
|
|||||||||||||| ||||||||| || ||| | |||| |||| | |||||||||| |||||||||| || ||| ||||||| ||||||| |
|
|
| T |
11987563 |
tagagatagttggtgtaaacttttcacattgatggaatcgtgtttcgttttacctttgaaatctttgagccctttgggttattcgagtgatgg |
11987655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 37462562 - 37462273
Alignment:
| Q |
1 |
atggttctagagatagttggtttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgagacccttgtgttattctcgtgatgg |
100 |
Q |
| |
|
|||| |||||||||||||||| |||||||| |||| ||| |||||| |||| || ||||||| |||||||||| || || ||||||||| ||||||| |
|
|
| T |
37462562 |
atggatctagagatagttggtgtaaactttgtactgtggataaatcgtgtttcacttcacctttgaaatctttgaggcctttatgttattctagtgatgg |
37462463 |
T |
|
| Q |
101 |
aaggaaggttcttttggaaggagatcatgttttgttgaaggtacaacattggaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaa |
200 |
Q |
| |
|
||| |||||| | |||||||| ||| ||||||||||||||| | || | ||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
37462462 |
aagtaaggttttgttggaaggcattcaggttttgttgaaggtagatcacagaaagctgttttggtatgattggaagagtgaacaagttagttatattgaa |
37462363 |
T |
|
| Q |
201 |
ggaaattctaatttggat---gatgctatggtttgtgttggtagtcttgtaccaccacccccttaccttgttgataatggtaggaagaaggag |
290 |
Q |
| |
|
||| | |||||||| || | ||||||| ||||||||| |||||||| | |||| |||| || |||||||||| |||||||||||||| |
|
|
| T |
37462362 |
ggagttcctaatttgaatggagctgctatgatttgtgttgaaagtcttgt---atcacctcctttccctgttgataattgtaggaagaaggag |
37462273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 4534 - 4244
Alignment:
| Q |
11 |
agatagttggtttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgagacccttgtgttattctcgtgatggaaggaaggtt |
110 |
Q |
| |
|
||||||||||| ||||||||||||| || | ||||| || | || || |||| |||||| ||| || || ||||||||| |||||||||| |||||| |
|
|
| T |
4534 |
agatagttggtgtaaactttttactatgatgaaatcgtgtgtcacttcacatttgaaatcttcgagtcctttatgttattctagtgatggaagtaaggtt |
4435 |
T |
|
| Q |
111 |
cttttggaaggagatcatgttttgttgaaggtacaacattggaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattcta |
210 |
Q |
| |
|
|| | |||||| | | ||||||||| |||| || ||| |||||||||||||||||||||||||| ||||||||||||||| ||||| || | || |
|
|
| T |
4434 |
ctgattgaaggaattgaggttttgttggaggtgcatcataagaagctgttttggtatgatttgaagactgaacaagttagtta---tgaagaaattcctg |
4338 |
T |
|
| Q |
211 |
atttggatgatgctatggtttgtgttggtagtcttgtaccaccacccccttaccttgttgataatggtaggaagaaggagaatcatacaagcaagag |
307 |
Q |
| |
|
|||| ||| |||| | |||||||||| ||||||||||||| | |||| || |||||||||| ||| |||||||||||||||||| ||||||| |
|
|
| T |
4337 |
atttcaatggagctaagatttgtgttggaagtcttgtaccac--cttcctttcc-tgttgataattctagtaagaaggagaatcatacatgcaagag |
4244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 156 - 253
Target Start/End: Original strand, 41966911 - 41967008
Alignment:
| Q |
156 |
ctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtaccacc |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||||||| | ||||||| ||||| || ||| |||||||||| |||||||||||||| |
|
|
| T |
41966911 |
ctgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattttgatgaagccatgttttgtgttggaagtcttgtaccacc |
41967008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 41966779 - 41966819
Alignment:
| Q |
6 |
tctagagatagttggtttaaactttttactttggttaaatc |
46 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
41966779 |
tctagagatagctggtgtaaactttttactttggttaaatc |
41966819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 253
Target Start/End: Original strand, 29453503 - 29453604
Alignment:
| Q |
152 |
gaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtacca |
251 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||| ||||||||||| | ||||||| ||| | |||||| |||||||||| |||||||| ||| |
|
|
| T |
29453503 |
gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgcca |
29453602 |
T |
|
| Q |
252 |
cc |
253 |
Q |
| |
|
|| |
|
|
| T |
29453603 |
cc |
29453604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 253
Target Start/End: Original strand, 29467979 - 29468080
Alignment:
| Q |
152 |
gaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtacca |
251 |
Q |
| |
|
|||| |||||||||||||| | ||||||||||| |||| |||||||||||||| | |||||||| |||| |||||| |||||||||| |||||||||||| |
|
|
| T |
29467979 |
gaagttgttttggtatgatctcaagagtgaacatgttaattatgttgaaggaattcctaatttgaatgaagctatgatttgtgttggaagtcttgtacca |
29468078 |
T |
|
| Q |
252 |
cc |
253 |
Q |
| |
|
|| |
|
|
| T |
29468079 |
cc |
29468080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 253
Target Start/End: Complemental strand, 29423208 - 29423107
Alignment:
| Q |
152 |
gaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtacca |
251 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||| |||| |||||| | ||||||| ||| | || ||| |||||||||| ||||||||| || |
|
|
| T |
29423208 |
gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagccatgatttgtgttggaagtcttgtatca |
29423109 |
T |
|
| Q |
252 |
cc |
253 |
Q |
| |
|
|| |
|
|
| T |
29423108 |
cc |
29423107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 288 - 335
Target Start/End: Original strand, 29453621 - 29453668
Alignment:
| Q |
288 |
gagaatcatacaagcaagagaagatactccttatttattatctgagtt |
335 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29453621 |
gagaattatacaagcaagagaaggtactccttatttattatctgagtt |
29453668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 249
Target Start/End: Original strand, 29443520 - 29443617
Alignment:
| Q |
152 |
gaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtac |
249 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||||||||||||||||| | ||| ||||| |||| || |||||||||| |||||||||| |
|
|
| T |
29443520 |
gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtac |
29443617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 29443634 - 29443685
Alignment:
| Q |
284 |
gaaggagaatcatacaagcaagagaagatactccttatttattatctgagtt |
335 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| |||||| |||| ||||||| |
|
|
| T |
29443634 |
gaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagtt |
29443685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 29467856 - 29467977
Alignment:
| Q |
8 |
tagagatagttggtttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgagacccttgtgttattctcgtgatggaaggaag |
107 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||| |||| ||||| |||||||||||||| || || ||||||| | |||||||| | | |
|
|
| T |
29467856 |
tagagatagttggcgtaaactttttactttggttagatcgtgtttcactttacagttggaatctttgaggcctttaggttattcgagcgatggaagtatg |
29467955 |
T |
|
| Q |
108 |
gttcttttggaaggagatcatg |
129 |
Q |
| |
|
||||| || |||| ||| |||| |
|
|
| T |
29467956 |
gttctgtttgaagtagaccatg |
29467977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 45243772 - 45243656
Alignment:
| Q |
1 |
atggttctagagatagttggtttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgagacccttgtgttattctcgtgatgg |
100 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||| |||| |||| | ||||||||||||||| || || |||||||| ||||| | |
|
|
| T |
45243772 |
atggttctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattcgagtgatcg |
45243673 |
T |
|
| Q |
101 |
aaggaaggttcttttgg |
117 |
Q |
| |
|
||| || ||||| |||| |
|
|
| T |
45243672 |
aagtaaagttctgttgg |
45243656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 45230505 - 45230415
Alignment:
| Q |
1 |
atggttctagagatagttggtttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgagacccttgtgttattc |
91 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| | || |||| | ||||| |||||||||||| || |||||||| |
|
|
| T |
45230505 |
atggttctagagatagttggtgtaaactttttactttggttaaatcgtggttcaattttcatttggtatctttgagacctttatgttattc |
45230415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 45230354 - 45230299
Alignment:
| Q |
149 |
ttggaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaa |
204 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| | ||||| |||||| |
|
|
| T |
45230354 |
ttggaagctgttttggtatgatttcaagagtgaacaagttactcatgttcaaggaa |
45230299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 45238023 - 45237978
Alignment:
| Q |
1 |
atggttctagagatagttggtttaaactttttactttggttaaatc |
46 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||| ||| |||| |
|
|
| T |
45238023 |
atggatctagagatagttggtgtaaactttttactttagttgaatc |
45237978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 45243614 - 45243561
Alignment:
| Q |
151 |
ggaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaa |
204 |
Q |
| |
|
|||||||||||||||||||| | || ||||||||| ||| ||||||| |||||| |
|
|
| T |
45243614 |
ggaagctgttttggtatgatctcaacagtgaacaacttacttatgttcaaggaa |
45243561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 256
Target Start/End: Complemental strand, 26574797 - 26574697
Alignment:
| Q |
156 |
ctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtaccaccac |
255 |
Q |
| |
|
|||||||||||||||||| ||||| | ||||||||| || || ||| | || | |||||||||| |||||| |||||||||| |||||||||||||||| |
|
|
| T |
26574797 |
ctgttttggtatgatttggagagtaatcaagttagtcattttcaagaagatcttgatttggatgacgctatgatttgtgttggaagtcttgtaccaccac |
26574698 |
T |
|
| Q |
256 |
c |
256 |
Q |
| |
|
| |
|
|
| T |
26574697 |
c |
26574697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 26574927 - 26574856
Alignment:
| Q |
8 |
tagagatagttggtttaaactttttactttggttaaatcaagttt---ggatttacctttggaatctttgag |
76 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||| |||| ||||||||| ||||||||||||| |
|
|
| T |
26574927 |
tagagatagttggtgtaaactttttactgtggttaaatcgtgtttcgatgatttacctgtggaatctttgag |
26574856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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