View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19442_high_8 (Length: 313)

Name: NF19442_high_8
Description: NF19442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19442_high_8
NF19442_high_8
[»] chr2 (3 HSPs)
chr2 (16-295)||(32599766-32600044)
chr2 (45-139)||(34354651-34354745)
chr2 (45-147)||(24467689-24467791)
[»] chr6 (1 HSPs)
chr6 (16-203)||(21906266-21906451)
[»] chr1 (3 HSPs)
chr1 (19-204)||(6849046-6849231)
chr1 (16-147)||(8059828-8059959)
chr1 (86-132)||(29223911-29223957)
[»] chr4 (2 HSPs)
chr4 (35-132)||(33927537-33927634)
chr4 (86-147)||(27389073-27389134)
[»] chr5 (3 HSPs)
chr5 (44-139)||(25968968-25969063)
chr5 (44-139)||(38063526-38063621)
chr5 (44-126)||(31118700-31118782)
[»] chr7 (1 HSPs)
chr7 (89-139)||(48897684-48897734)
[»] chr3 (5 HSPs)
chr3 (83-129)||(25662612-25662658)
chr3 (83-129)||(25669017-25669063)
chr3 (83-129)||(25675422-25675468)
chr3 (83-129)||(25682096-25682142)
chr3 (83-129)||(25690400-25690446)
[»] chr8 (1 HSPs)
chr8 (44-147)||(1362919-1363022)


Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 32599766 - 32600044
Alignment:
Q  16 atgaatttgaaacgaattaagagaaaaactaaaattagttagccaatcgacacttctattctcatcccgccatgtatgatagaaatgcacctgccaattc 115  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32599766 atgaatttgaaacgaattaagagaaaagctaaaattagctagccaatcgacacttctattctcatcccgccatgtatgatagaaatgcacctgccaattc 32599865  T
Q  116 aactttaaaagctcttgaatgcggtacaccaaagttgacggtctacccttaaatttgacagtccccgtgatgatatcaaccaacattttcggcttctatt 215  Q
    ||||||||||||||||||||||||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32599866 aactttaaaagctcttgaatgcggtgcacaaaagttggcggtctacccttgaatttgacagtccccgtgatgatatcaaccaacattttcggcttctatt 32599965  T
Q  216 gcataagtttcgttagttctttattgtattttttgttcgaatagtnnnnnnnntttacatattttttcttttgacgatgc 295  Q
    |||||||||| ||||||||||||||||||||||||||||||||||        ||| |||||||||||||||||||||||    
T  32599966 gcataagttttgttagttctttattgtattttttgttcgaatagt-aaaaaaatttgcatattttttcttttgacgatgc 32600044  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 139
Target Start/End: Original strand, 34354651 - 34354745
Alignment:
Q  45 taaaattagttagccaatcgacacttctattctcatcccgccatgtatgatagaaatgcacctgccaattcaactttaaaagctcttgaatgcgg 139  Q
    |||||||||  | ||||||  ||||||||||  | |||||||||||||||| ||||||||||||| | |||||||||| ||| ||||| ||||||    
T  34354651 taaaattagccatccaatcagcacttctatttccctcccgccatgtatgattgaaatgcacctgctagttcaactttagaaggtcttgtatgcgg 34354745  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 24467791 - 24467689
Alignment:
Q  45 taaaattagttagccaatcgacacttctattctcatcccgccatgtatgatagaaatgcacctgccaattcaactttaaaagctcttgaatgcggtacac 144  Q
    |||||||||  |||||||| |||||||||||  | ||||| ||  |||| | ||| ||||||| | |||| ||||||||||||| |||||| ||| ||||    
T  24467791 taaaattaggaagccaatcaacacttctatttccctcccgtcaaatatggttgaattgcacctactaatttaactttaaaagctattgaatacggcacac 24467692  T
Q  145 caa 147  Q
    |||    
T  24467691 caa 24467689  T

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Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 21906266 - 21906451
Alignment:
Q  16 atgaatttgaaacgaattaagagaaaaactaaaattagttagccaatcgacacttctattctcatcccgccatgtatgatagaaatgcacctgccaattc 115  Q
    |||||||| ||| |||||||||||||| ||||||||||   | |||||| ||||||||||| | ||| |||||||||||| |||||||||||| |||||     
T  21906266 atgaatttaaaaagaattaagagaaaagctaaaattagcg-gtcaatcggcacttctattcccctcctgccatgtatgattgaaatgcacctgtcaatta 21906364  T
Q  116 aactttaaaagctcttgaatgcggtacaccaaagttgacggtctacccttaaatttgacagtccccgtgatgatatcaaccaacattt 203  Q
    ||||||||||||| ||||||||||| || |||||||| |||||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  21906365 aactttaaaagcttttgaatgcggtgcatcaaagttggcggtctacccttaaatttgacagt-cccatgatcatatcaaccaacattt 21906451  T

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Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 6849231 - 6849046
Alignment:
Q  19 aatttgaaacgaattaagagaaaaactaaaattagttagccaatcgacacttctattctcatcccgccatgtatgatagaaatgcacctgccaattcaac 118  Q
    ||||||||| |||| ||||||||| |||||||||| ||| |||||  ||||||||||| | |||||| ||||||||| ||||||||||||||| || |||    
T  6849231 aatttgaaaagaatcaagagaaaagctaaaattagctagtcaatccgcacttctattcccctcccgctatgtatgattgaaatgcacctgccagtttaac 6849132  T
Q  119 tttaaaagctcttgaatgcggtacaccaaagttgacggtctacccttaaatttgacagtccccgtgatgatatcaaccaacatttt 204  Q
    |||||||||||||||||||||| ||||||||| |  | ||||||||| || ||||| |||||  |||| |||||||||||||||||    
T  6849131 tttaaaagctcttgaatgcggttcaccaaagtaggtgttctacccttgaagttgacggtcccaatgatcatatcaaccaacatttt 6849046  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 8059828 - 8059959
Alignment:
Q  16 atgaatttgaaacgaattaagagaaaaactaaaattagttagccaatcgacacttctattctcatcccgccatgtatgatagaaatgcacctgccaattc 115  Q
    |||||| ||||| ||||  | |||||| ||||||||||  ||||||||  ||||||||||  | || ||||| ||||| | ||| ||||||||||| ||     
T  8059828 atgaatgtgaaaagaatctaaagaaaagctaaaattagcaagccaatcagcacttctatttccctcgcgccaggtatggttgaattgcacctgccagttt 8059927  T
Q  116 aactttaaaagctcttgaatgcggtacaccaa 147  Q
    |||||||||||||||||||| ||| |||||||    
T  8059928 aactttaaaagctcttgaatacggcacaccaa 8059959  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 29223957 - 29223911
Alignment:
Q  86 catgtatgatagaaatgcacctgccaattcaactttaaaagctcttg 132  Q
    |||||||||| |||||| |||||||||||||||||||| ||||||||    
T  29223957 catgtatgattgaaatgtacctgccaattcaactttaagagctcttg 29223911  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 132
Target Start/End: Complemental strand, 33927634 - 33927537
Alignment:
Q  35 agagaaaaactaaaattagttagccaatcgacacttctattctcatcccgccatgtatgatagaaatgcacctgccaattcaactttaaaagctcttg 132  Q
    ||||||||  |||||||||| | ||||||  |||||||||| |  |||||||| ||||||| ||||||||| ||||||||||||||||||||||||||    
T  33927634 agagaaaaggtaaaattagtcatccaatcagcacttctatttttgtcccgccaggtatgatcgaaatgcacttgccaattcaactttaaaagctcttg 33927537  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 27389134 - 27389073
Alignment:
Q  86 catgtatgatagaaatgcacctgccaattcaactttaaaagctcttgaatgcggtacaccaa 147  Q
    ||||| |||| |||||||| |||||||||||||||||| |||||||| || ||| |||||||    
T  27389134 catgtttgattgaaatgcatctgccaattcaactttaagagctcttgtatacggcacaccaa 27389073  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 139
Target Start/End: Original strand, 25968968 - 25969063
Alignment:
Q  44 ctaaaattagttagccaatcgacacttctattctcatcccgccatgtatgatagaaatgcacctgccaattcaactttaaaagctcttgaatgcgg 139  Q
    ||||||||||  | ||||||  ||||||||||  | ||||| || ||||||| ||||||||||||||| |||||||||||||| ||||| ||||||    
T  25968968 ctaaaattagccatccaatcagcacttctatttccctcccgtcaggtatgattgaaatgcacctgccagttcaactttaaaaggtcttgtatgcgg 25969063  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 139
Target Start/End: Complemental strand, 38063621 - 38063526
Alignment:
Q  44 ctaaaattagttagccaatcgacacttctattctcatcccgccatgtatgatagaaatgcacctgccaattcaactttaaaagctcttgaatgcgg 139  Q
    ||||||||||  | |||||| |||||||||||  | |||||||| ||||||| ||||||||||||| | ||||| |||||||| ||||| ||||||    
T  38063621 ctaaaattagccatccaatcaacacttctatttccctcccgccaggtatgattgaaatgcacctgctagttcaattttaaaaggtcttgtatgcgg 38063526  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 31118782 - 31118700
Alignment:
Q  44 ctaaaattagttagccaatcgacacttctattctcatcccgccatgtatgatagaaatgcacctgccaattcaactttaaaag 126  Q
    ||||||||||| || ||||| |||||||||||  |||||| |||  |||||| ||||||||| ||  | ||||||||||||||    
T  31118782 ctaaaattagtcagtcaatcaacacttctatttccatccctccacatatgattgaaatgcacatgtaagttcaactttaaaag 31118700  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 48897684 - 48897734
Alignment:
Q  89 gtatgatagaaatgcacctgccaattcaactttaaaagctcttgaatgcgg 139  Q
    ||||||| ||||||||||||||| |||||||||||||| ||||| ||||||    
T  48897684 gtatgattgaaatgcacctgccatttcaactttaaaaggtcttggatgcgg 48897734  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 25662658 - 25662612
Alignment:
Q  83 cgccatgtatgatagaaatgcacctgccaattcaactttaaaagctc 129  Q
    ||||||||||||| |||||||||| |||||||||||||||| |||||    
T  25662658 cgccatgtatgattgaaatgcaccagccaattcaactttaagagctc 25662612  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 25669063 - 25669017
Alignment:
Q  83 cgccatgtatgatagaaatgcacctgccaattcaactttaaaagctc 129  Q
    ||||||||||||| |||||||||| |||||||||||||||| |||||    
T  25669063 cgccatgtatgattgaaatgcaccagccaattcaactttaagagctc 25669017  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 25675468 - 25675422
Alignment:
Q  83 cgccatgtatgatagaaatgcacctgccaattcaactttaaaagctc 129  Q
    ||||||||||||| |||||||||| |||||||||||||||| |||||    
T  25675468 cgccatgtatgattgaaatgcaccagccaattcaactttaagagctc 25675422  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 25682142 - 25682096
Alignment:
Q  83 cgccatgtatgatagaaatgcacctgccaattcaactttaaaagctc 129  Q
    ||||||||||||| |||||||||| |||||||||||||||| |||||    
T  25682142 cgccatgtatgattgaaatgcaccagccaattcaactttaagagctc 25682096  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 25690446 - 25690400
Alignment:
Q  83 cgccatgtatgatagaaatgcacctgccaattcaactttaaaagctc 129  Q
    ||||||||||||| |||||||||| |||||||||||||||| |||||    
T  25690446 cgccatgtatgattgaaatgcaccagccaattcaactttaagagctc 25690400  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 1363022 - 1362919
Alignment:
Q  44 ctaaaattagttagccaatcgacacttctattctcatcccgccatgtatgatagaaatgcacctgccaattcaactttaaaagctcttgaatgcggtaca 143  Q
    ||||||||||  ||||||||  ||||||||||  | ||| |||| ||||| | ||| |||| |||| | || |||||||||||||||||||| ||| |||    
T  1363022 ctaaaattagcaagccaatcagcacttctatttccctcctgccaggtatggttgaattgcaactgcaagtttaactttaaaagctcttgaatacggcaca 1362923  T
Q  144 ccaa 147  Q
    ||||    
T  1362922 ccaa 1362919  T

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