View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19442_low_1 (Length: 715)
Name: NF19442_low_1
Description: NF19442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19442_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 535; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 95 - 699
Target Start/End: Original strand, 3069150 - 3069754
Alignment:
| Q |
95 |
ttgttaaaaatccaagttcttatcgtgaattgtgtttgtatgtgtagtacgatctaacaggaaaattgcggtctataaaacactaccttctgcatgatat |
194 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3069150 |
ttgttaaaaatccaagttcttatcgtgaattgtatttgtatgtgtagtacgatctaacaggaaaattgcggtctataaaacactaccttctgcatgatat |
3069249 |
T |
|
| Q |
195 |
ccaagagaatagcagactaattgcttcaaagttgaaggagaagaaattcacaatttctaagctattgatctccaaatgttgtcaacatgcaacatgattt |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3069250 |
ccaagagaatagcagactaattgcttcaaagttgaaggagaagaaattcacaatttctaagctattgatctccaaatgttgtcaacattcaacatgattt |
3069349 |
T |
|
| Q |
295 |
aaattagtaccatttggggtaagtgaagcacaacttgatcactcaatgtaattgaagaaagtgaagcagatgcacaataataaaatttgattcatatgga |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3069350 |
aaattagtaccatttggggtaagtgaagcacaacttgatcactcaatgtaattgaagaaagtgaagcagatgcacaataataaaatttgattcatatgga |
3069449 |
T |
|
| Q |
395 |
ctaaaattagcatttggatttacttgcacagttgatgtaaaagattcaattttcattttgaaattggccatctaatctttnnnnnnnnnnnnnnnnnnca |
494 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3069450 |
ctaaaattagcatttggatttacttgcacagatgatgtaaaagattcaattttcattttgaaattggccatctaatctttagagagagagagagagagca |
3069549 |
T |
|
| Q |
495 |
actatgtagatatagatattagatatagaaactacagtcgcacccatatacacgggtacacaacacaactactcttgaaggaacataaaaccacagcttg |
594 |
Q |
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| T |
3069550 |
actatgtagatatagatattagatatagaaactacagtcgcacccatatacacgggtacaaaacacaactactcttgaaggaacataaaaccacagcttg |
3069649 |
T |
|
| Q |
595 |
atacacagacataaaagcaatatcacagtatgcttaaaacagcgaaacaaggataagcacaagctgaaccccttgcttagcaacttattaatttagagaa |
694 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3069650 |
atacacagacataaaagcaatatcacagtatgcttaaaacagcgaaacaaggataagcacaagctgaaccccttgcttagcaacttattaatttagagaa |
3069749 |
T |
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| Q |
695 |
tattg |
699 |
Q |
| |
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||||| |
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| T |
3069750 |
tattg |
3069754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 185 - 462
Target Start/End: Original strand, 3067037 - 3067308
Alignment:
| Q |
185 |
tgcatgatatccaagagaatagcagactaattgcttcaaagttgaaggagaagaaattcacaatttctaagctattgatctccaaatgttgtcaacatgc |
284 |
Q |
| |
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||||||||||||||||||||| |||| |||||||||||| ||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| |
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| T |
3067037 |
tgcatgatatccaagagaataacagaataattgcttcaaggttgaaggagaagaacttcaccatctctaagctattgatctccaaatgttgtcaac---- |
3067132 |
T |
|
| Q |
285 |
aacatgatttaaattagtaccatttggggtaagtgaagcacaacttgatcactcaatgtaattgaagaaagtgaagcagatgcacaataataaaatttga |
384 |
Q |
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| T |
3067133 |
---atgatttaaattagtaccatttggggtaagcgaagcacaacttgatcactcaatgtgcttgaagaaagtgaagcaaatatacaatgataaaatttga |
3067229 |
T |
|
| Q |
385 |
ttcatatggactaaaattagcatttggatttacttgcacagt-tgatgtaaaagattcaattttcattttgaaattggc |
462 |
Q |
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| T |
3067230 |
tccatatgcactaaaattagcatttggatttacttgcacagtatgatgtaaaagattcaattttcattttgaagttggc |
3067308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 3081879 - 3082052
Alignment:
| Q |
13 |
tcatcaaggaaaaggtgattttgaatatgattaggctttt-aagttctcagcttacagtttaatacttctgcaatatttattattgttaaaaatccaagt |
111 |
Q |
| |
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|||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |
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| T |
3081879 |
tcattaaggaaaaggtgattttaaatatatttaggctttttaagttctcagcttacagtttaatgcttctgcaatatttgttattgtttaaaatccaagt |
3081978 |
T |
|
| Q |
112 |
tcttatcgtgaattgtgtttgtatgtgtagtacgatctaacaggaaaattgcggtctataaaacactaccttct |
185 |
Q |
| |
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||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3081979 |
tctgattgtgaattgtgtttgtatgtgtagtatgatctaacaggaaaattgcggtctataaaacactaccttct |
3082052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 3068683 - 3068773
Alignment:
| Q |
13 |
tcatcaaggaaaaggtgattttgaatatgattaggcttttaagttctcagcttacagtttaatacttctgcaatatttattattgttaaaa |
103 |
Q |
| |
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| T |
3068683 |
tcatcaaggaaaaggtgattttgaatatgattaggcttttaagttctcagcttacagtttaatacttctgcaatatttattattgttaaaa |
3068773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 284 - 474
Target Start/End: Original strand, 3047733 - 3047927
Alignment:
| Q |
284 |
caacatgatttaaattagta--ccatttggggtaagtgaagcacaacttgatcac--tcaatgtaattgaagaaagtgaagcagatgcacaataataaaa |
379 |
Q |
| |
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|||||||||||||||||||| |||||||| ||| ||||| | ||||||| ||| ||||||| ||||||||||||||| | |||| ||||||| | |
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| T |
3047733 |
caacatgatttaaattagtataccatttgga-taactgaagaaaaacttgaccacactcaatgtgattgaagaaagtgaatcgcgggcacgataataaca |
3047831 |
T |
|
| Q |
380 |
tttgattcatatggactaaaattagcatttggatttacttgcacagt-tgatgtaaaagattcaattttcattttgaaattggccatctaatcttt |
474 |
Q |
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|||| || || | ||||||||| || |||||||||| || ||| | ||||||||||| |||| ||||||||||||||||| | || |||||||| |
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| T |
3047832 |
tttgcatcctaagtactaaaatttccaattggatttacatgtacaatatgatgtaaaagtttcagttttcattttgaaattgacaatgtaatcttt |
3047927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 303 - 361
Target Start/End: Original strand, 32304853 - 32304911
Alignment:
| Q |
303 |
accatttggggtaagtgaagcacaacttgatcactcaatgtaattgaagaaagtgaagc |
361 |
Q |
| |
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|||||||| ||||||||||||||||||||| ||||||| | |||||||||| |||||| |
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| T |
32304853 |
accatttgtggtaagtgaagcacaacttgaccactcaagatgattgaagaaattgaagc |
32304911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 557 - 614
Target Start/End: Original strand, 3048235 - 3048292
Alignment:
| Q |
557 |
acacaactactcttgaaggaacataaaaccacagcttgatacacagacataaaagcaa |
614 |
Q |
| |
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|||| |||| ||||||||| ||||||||| |||| |||||||||| |||||||||||| |
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| T |
3048235 |
acactactagtcttgaaggtacataaaactacaggttgatacacacacataaaagcaa |
3048292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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