View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19442_low_14 (Length: 236)
Name: NF19442_low_14
Description: NF19442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19442_low_14 |
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| [»] scaffold1297 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8317315 - 8317094
Alignment:
| Q |
1 |
tgctgtaccatacccagagtaagtgaattgcttgagatgcaaagcattgaatttgatggattggctatgtaggtcatgggatgccgcataataaaattca |
100 |
Q |
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| T |
8317315 |
tgctgtaccatacccagagtaagtgaattgcttgagatgcaaagcattgaatttgatggattggctatgtaggtcatgggatgccgcattataaaattca |
8317216 |
T |
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| Q |
101 |
atgtcttgttctatggaaacaatttcaagtagaggagcttctaaaataagatcttttccacccgaccaattgcagtttttgatatcaaactttctaagaa |
200 |
Q |
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| T |
8317215 |
atgtcttgttctatggaaacaatttcaagtagaggagcttctacaataagatcttttccacccgaccaattgcagtttttgatatcaaactttctaagaa |
8317116 |
T |
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| Q |
201 |
gtggtaaattaagggtcaaaca |
222 |
Q |
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| T |
8317115 |
gtggtaaattaagggtcaaaca |
8317094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 188
Target Start/End: Original strand, 8358987 - 8359072
Alignment:
| Q |
103 |
gtcttgttctatggaaacaatttcaagtagaggagcttctaaaataagatcttttccacccgaccaattgcagtttttgatatcaa |
188 |
Q |
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| T |
8358987 |
gtcttgttctatggaaatgttttcaagaagaggagcttgtacgataagatcttttctaccacaccaaatgcagtttttaatatcaa |
8359072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1297 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1297
Description:
Target: scaffold1297; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 1745 - 1857
Alignment:
| Q |
102 |
tgtcttgttctatggaaacaatttcaagtagaggagcttctaaaataagatcttttccacccgaccaattgcagtttttgatatcaaactttctaagaag |
201 |
Q |
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| T |
1745 |
tgtcttgtcctatggaaacagtttcaagtagggaggcttgtacaataacatattttccattcgactaatggcagttactgatctcaaacttttttacaag |
1844 |
T |
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| Q |
202 |
tggtaaattaagg |
214 |
Q |
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| T |
1845 |
cggtaaattaagg |
1857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 7795631 - 7795571
Alignment:
| Q |
131 |
agaggagcttctaaaataagatcttttccacccgaccaattgcagtttttgatatcaaact |
191 |
Q |
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| T |
7795631 |
agagaagcttctacaataacatcctttccacttgaccaattgcagttcttgatctcaaact |
7795571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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